Publications from the Department of Biology

Publications:

Research is a key focus of the faculty and curriculum in the Department of Biology. Across a variety of different labs, disciplines, and fields, our professors publish numerous journal articles each year, which can be found below. 

(Publications are arranged by the year of publication)


In Press

Batz, Z. A., Clemento, A. J., Fitzenwanker, J., Ring, T. J., Garza, J. C., & Armbruster, P. A. (2020). Rapid adaptive evolution of the diapause program during range expansion of an invasive mosquito. Evolution.

Larsen, E. A. and Shirey, V.M. (In press) Method matters: pitfalls in analyzing phenology from occurrence records. Ecology Letters

Mainali, K., Hefley, T., Ries, L., & Fagan, W. (2020). Matching expert range maps with species distribution model predictions. Conservation Biology.

Mlynek, K. D., Bulock, L. L., Stone, C. J., Curran, L. J., Sadykov, M. R., Bayles, K. W., & Brinsmade, S. R. (2020). Genetic and Biochemical Analysis of CodY-Mediated Cell Aggregation in Staphylococcus aureus Reveals an Interaction between Extracellular DNA and Polysaccharide in the Extracellular Matrix. Journal of Bacteriology202(8).

Morrissette, V. A., & Rolfes, R. J. (2020). The intersection between stress responses and inositol pyrophosphates in Saccharomyces cerevisiae. Current Genetics, 1-10.

Wang, Z., Jung, J. S., Inbar, T. C., Rangoussis, K. M., Faaborg-Andersen, C., & Coate, T. M. (2020). The Purinergic Receptor P2rx3 is Required for Spiral Ganglion Neuron Branch Refinement during Development. Eneuro7(4).

Yamazaki, R., Ohno, N., & Huang, J. K. (2020). Acute motor deficit and subsequent remyelination‐associated recovery following internal capsule demyelination in mice. Journal of Neurochemistry.

Cervantes-Sandoval, I., Davis, R. L., & Berry, J. A. (2020). Rac1 Impairs Forgetting-Induced Cellular Plasticity in Mushroom Body Output Neurons. Frontiers in Cellular Neuroscience14, 258.

Ryder, E. F., Morgan, W. R., Sierk, M., Donovan, S. S., Robertson, S. D., Orndorf, H. C., Rosenwald, A.G., … & Tapprich, W. E. (2020). Incubators: Building community networks and developing open educational resources to integrate bioinformatics into life science education. Biochemistry and Molecular Biology Education48(4), 381-390.


Publications in 2020

Batz, Z. A., Clemento, A. J., Fitzenwanker, J., Ring, T. J., Garza, J. C., & Armbruster, P. A. (2020). Rapid adaptive evolution of the diapause program during range expansion of an invasive mosquito. Evolution.

Baydyuk, M., Morrison, V. E., Gross, P. S., & Huang, J. K. (2020). Extrinsic Factors Driving Oligodendrocyte Lineage Cell Progression in CNS Development and Injury. Neurochemical Research, 1-13.

Belitz, M. W., Larsen, E. A., Ries, L., & Guralnick, R. P. (2020). The accuracy of phenology estimators for use with sparsely sampled presence‐only observations. Methods in Ecology and Evolution.

Bried, J., Ries, L., Smith, B., Patten, M., Abbott, J., Ball-Damerow, J., … & Dijkstra, K. D. (2020). Towards Global Volunteer Monitoring of Odonate Abundance. BioScience.

Brooks, P. M., Rose, K. P., MacRae, M. L., Rangoussis, K. M., Gurjar, M., Hertzano, R., & Coate, T. M. (2020). Pou3f4‐expressing otic mesenchyme cells promote spiral ganglion neuron survival in the postnatal mouse cochlea. Journal of Comparative Neurology.

Campbell, D. L., Thessen, A. E., & Ries, L. (2020). A novel curation system to facilitate data integration across regional citizen science survey programs. PeerJ8, e9219.

Collins, M. M., Behera, R. K., Pallister, K. B., Evans, T. J., Burroughs, O., Flack, C., … & Nygaard, T. K. (2020). The Accessory Gene saeP of the SaeR/S Two-Component Gene Regulatory System Impacts Staphylococcus aureus Virulence During Neutrophil Interaction. Frontiers in Microbiology11, 561.

Galezo, A. A., Foroughirad, V., Krzyszczyk, E., Frère, C. H., & Mann, J. (2020). Juvenile social dynamics reflect adult reproductive strategies in bottlenose dolphins. Behavioral Ecology.

Hopper, L. M., & Ross, S. R. (Eds.). (2020). Chimpanzees in Context: A Comparative Perspective on Chimpanzee Behavior, Cognition, Conservation, and Welfare. University of Chicago Press.

Jin, J., He, X., & Silva, E. (2020). Stable intronic sequence RNAs (sisRNAs) are selected regions in introns with distinct properties. BMC Genomics21, 1-16.

King, A. N., de Mets, F., & Brinsmade, S. R. (2020). Who’s in control? Regulation of metabolism and pathogenesis in space and time. Current Opinion in Microbiology.

Leu, S. T., Sah, P., Krzyszczyk, E., Jacoby, A. M., Mann, J., & Bansal, S. (2020). Sex, synchrony, and skin contact: integrating multiple behaviors to assess pathogen transmission risk. Behavioral Ecology.

Mogi, M., Armbruster, P. A., & Tuno, N. (2020). Differences in Responses to Urbanization Between Invasive Mosquitoes, Aedes japonicus japonicu s (Diptera: Culicidae) and Aedes albopictus, in Their Native Range, Japan. Journal of Medical Entomology57(1), 104-112.

Morrison, V. E., Smith, V. N., & Huang, J. K. (2020). Retinoic acid is required for oligodendrocyte precursor cell production and differentiation in the postnatal mouse corpus callosum. Eneuro7(1).

Murphy, S. M., Lewis, D., & Wimp, G. M. (2020). Predator population size structure alters consumption of prey from epigeic and grazing food webs. Oecologia, 192(3), 791-799.

Powell, S. N., Wallen, M. M., Miketa, M. L., Krzyszczyk, E., Foroughirad, V., Bansal, S., & Mann, J. (2020). Sociality and tattoo skin disease among bottlenose dolphins in Shark Bay, Australia. Behavioral Ecology31(2), 459-466.

Rippel, T. M., Mooring, E. Q., Tomasula, J., & Wimp, G. M. (2020). Habitat edge effects decrease litter accumulation and increase litter decomposition in coastal salt marshes. Landscape Ecology, 35(10), 2179-2190.

Singleton, K. S., Silva-Rodriguez, P., & Silva, E. M. (2020). Pairing your Sox: identification of Sox11 partner proteins and interaction domains in the developing neural plate. bioRxiv.

Steidle, E. A., Morrissette, V. A., Fujimaki, K., Chong, L., Resnick, A. C., Capaldi, A. P., & Rolfes, R. J. (2020). The InsP7 phosphatase Siw14 regulates inositol pyrophosphate levels to control localization of the general stress response transcription factor Msn2. Journal of Biological Chemistry295(7), 2043-2056.


Publication in 2019

Abarca, M., Larsen, E. A., & Ries, L. (2019). Heatwaves and novel host consumption increase overwinter mortality of an imperiled wetland butterfly. Frontiers in Ecology and Evolution7, 193.

Abarca, M. (2019). Herbivore seasonality responds to conflicting cues: Untangling the effects of host, temperature, and photoperiod. PloS One14(9), e0222227.

Abdala‐Roberts, L., Puentes, A., Finke, D. L., Marquis, R. J., Montserrat, M., Poelman, E. H., … & Mooney, K. (2019). Tri‐trophic interactions: bridging species, communities and ecosystems. Ecology Letters, 22(12), 2151-2167.

Armbruster, P. A. (2019). Tiger mosquitoes tackled in a trial. Nature.com 

Modlmeier, A. P., Colman, E., Hanks, E. M., Bringenberg, R., Bansal, S., & Hughes, D. P. (2019). Ant colonies maintain social homeostasis in the face of decreased density. eLife8, e38473.

Augagneur, Y., King, A. N., Germain‐Amiot, N., Sassi, M., Fitzgerald, J. W., Sahukhal, G. S., … & Brinsmade, S. R. (2020). Analysis of the CodY RNome reveals RsaD as a stress‐responsive riboregulator of overflow metabolism in Staphylococcus aureus. Molecular Microbiology113(2), 309-325.

Batz, Z. A., Brent, C. S., Marias, M. R., Sugijanto, J., & Armbruster, P. A. (2019). Juvenile Hormone III but not 20-hydroxyecdysone Regulates the Embryonic Diapause of Aedes albopictus. Frontiers in Physiology10, 1352.

Behera, R. K., Mlynek, K. D., Linz, M. S., & Brinsmade, S. R. (2019). A fluorescence-based method to study bacterial gene regulation in infected tissues. JoVE (Journal of Visualized Experiments), (144), e59055.

Carlson, C. J., Zipfel, C. M., Garnier, R., & Bansal, S. (2019). Global estimates of mammalian viral diversity accounting for host sharing. Nature Ecology & Evolution3(7), 1070-1075.

Fink, M. Y., Maloney, J., Keselman, A., Li, E., Menegas, S., Staniorski, C., & Singer, S. M. (2019). Proliferation of Resident Macrophages Is Dispensable for Protection during Giardia duodenalis Infections. ImmunoHorizons3(8), 412-421.

Foroughirad, V., Levengood, A. L., Mann, J., & Frère, C. H. (2019). Quality and quantity of genetic relatedness data affect the analysis of social structure. Molecular Ecology Resources19(5), 1181-1194.

He, H. Y., & Cline, H. T. (2019). What is excitation/inhibition and how is it regulated? A case of the elephant and the wisemen. Journal of Experimental Neuroscience13, 1179069519859371.

Lee, H. H., Wallen, M. M., Krzyszczyk, E., & Mann, J. (2019). Every scar has a story: age and sex-specific conflict rates in wild bottlenose dolphins. Behavioral Ecology and Sociobiology73(5), 63.

Manlik, O., Krützen, M., Kopps, A. M., Mann, J., Bejder, L., Allen, S. J., … & Sherwin, W. B. (2019). Is MHC diversity a better marker for conservation than neutral genetic diversity? A case study of two contrasting dolphin populations. Ecology and Evolution9(12), 6986-6998.

Michalski, J. R., Glotch, T. D., Rogers, A. D., Niles, P. B., Cuadros, J., Ashley, J. W., & Johnson, S. S. (2019). The geology and astrobiology of McLaughlin crater, Mars: An ancient lacustrine basin containing turbidites, mudstones, and serpentinites. Journal of Geophysical Research: Planets124(4), 910-940.

Nelson, T. M., Wallen, M. M., Bunce, M., Oskam, C. L., Lima, N., Clayton, L., & Mann, J. (2019). Detecting respiratory bacterial communities of wild dolphins: implications for animal health. Marine Ecology Progress Series622, 203-217.

Patten, M. M. (2019). The X chromosome favors males under sexually antagonistic selection. Evolution73(1), 84-91.

Ragland, G. J., Armbruster, P. A., & Meuti, M. E. (2019). Evolutionary and functional genetics of insect diapause: a call for greater integration. Current Opinion in Insect Science36, 74-81.

Ries, L., Zipkin, E. F., & Guralnick, R. P. (2019). Tracking trends in monarch abundance over the 20th century is currently impossible using museum records. Proceedings of the National Academy of Sciences116(28), 13745-13748.

Saunders, S. P., Ries, L., Neupane, N., Ramírez, M. I., García-Serrano, E., Rendón-Salinas, E., & Zipkin, E. F. (2019). Multiscale seasonal factors drive the size of winter monarch colonies. Proceedings of the National Academy of Sciences116(17), 8609-8614.

Singer, S. M., Fink, M. Y., & Angelova, V. V. (2019). Recent insights into innate and adaptive immune responses to Giardia. In Advances in Parasitology (Vol. 106, pp. 171-208). Academic Press.

Teramoto, T., Huang, X., Armbruster, P. A., & Padmanabhan, R. (2019). Infection of Aedes albopictus mosquito C6/36 cells with the wMelpop strain of Wolbachia modulates dengue virus-induced host cellular transcripts and induces critical sequence alterations in the dengue viral genome. Journal of Virology93(15), e00581-19.

van Aswegen, M., Christiansen, F., Symons, J., Mann, J., Nicholson, K., Sprogis, K., & Bejder, L. (2019). Morphological differences between coastal bottlenose dolphin (Tursiops aduncus) populations identified using non-invasive stereo-laser photogrammetry. Scientific Reports9(1), 1-14.

Wepprich, T., Adrion, J. R., Ries, L., Wiedmann, J., & Haddad, N. M. (2019). Butterfly abundance declines over 20 years of systematic monitoring in Ohio, USA. PLoS One14(7), e0216270.

Wimp, G. M., Lewis, D., & Murphy, S. (2019). Impacts of nutrient subsidies on salt marsh food webs: a latitudinal survey. Frontiers in Ecology and Evolution, 7, 350.

Wimp, G. M., Ries, L., Lewis, D., & Murphy, S. M. (2019). Habitat edge responses of generalist predators are predicted by prey and structural resources. Ecology, 100(6), e02662.

Wimp, G. M., Tomasula, J., & Hamilton, M. B. (2019). Putting the genes into community genetics. Molecular Ecology28(19), 4351-4353.


Publications in 2018

Armbruster P.A. Molecular pathways to nonbiting mosquitoes. Proceedings of the National
      Academy of Sciences. 2018;115(5):836–838.

Johnson S.S., Anslyn E.V., Graham H.V., Mahaffy P.R., Ellington A.D. Fingerprinting Non-Terran
     Life. Astrobiology. 2018 Aug.

Kaiser J.C., King A.N., Grigg J.C., Sheldon J.R., Edgell D.R., Murphy M.E.P., Brinsmade S.R.,
     Heinrichs D.E. Repression of branched-chain amino acid synthesis in Staphylococcus aureus is
     mediated by isoleucine via CodY, and by a leucine-rich attenuator peptide. PLOS Genetics.
     2018;14(1).

Lee E.C., Arab A., Goldlust S.M., Viboud C., Grenfell B.T., Bansal S. Deploying digital health
      data to optimize influenza surveillance at national and local scales. PLOS Computational
      Biology. 2018;14(3).

Miketa M., Patterson E., Krzyszczyk E., Foroughirad V., Mann J. Calf age and sex affect maternal
      diving behaviour in Shark Bay bottlenose dolphins. Animal Behaviour. 2018;137:107–117.

Mlynek K.D., Sause W.E., Moormeier D.E., Sadykov M.R., Hill K.R., Torres V.J., Bayles K.W.,
      Brinsmade S.R. Nutritional Regulation of the Sae Two-Component System by CodY in
      Staphylococcus aureus. Journal of Bacteriology. 2018;200(8).

Patten M.M. Selfish X chromosomes and speciation. Molecular Ecology. 2018.

Powell S.N., Wallen M.M., Bansal S., Mann J. Epidemiological investigation of tattoo-like skin
      lesions among bottlenose dolphins in Shark Bay, Australia. Science of The Total
      Environment. 2018;630:774–780.

Powell S.N., Wallen M.M., Bansal S., Mann J. Epidemiological investigation of tattoo-like skin
     lesions among bottlenose dolphins in Shark Bay, Australia. Science of The Total Environment.
     2018;630:774–780.

Sah P, Mann J, Bansal S. 2018. Disease implications of animal social network structure: a
     synthesis across social systems. Journal of Animal Ecology 87.

Saunders S.P., Ries L, Oberhauser K.S., Thogmartin W.E., Zipkin E.F. Local and cross-seasonal
    associations of climate and land use with abundance of monarch butterflies Danaus
    plexippus. Ecography. 2018;41(2):278–290.

Semmens D.J., Diffendorfer J.E., Bagstad K.J., Wiederholt R., Oberhauser K., Ries L.,
     Semmens B.X., Goldstein J., Loomis J., Thogmartin W.E., et al. Quantifying ecosystem
     service flows at multiple scales across the range of a long-distance migratory species.
     Ecosystem Services. 2018.

Zaikova E., Benison K.C., Mormile M.R., Johnson S.S. Microbial communities and their predicted metabolic functions in a desiccating acid salt lake. Extremophiles. 2018;22(3):367–379.


Publications in 2017

Barash, N. R., Maloney, J. G., Singer, S. M., & Dawson, S. C. (2017). Giardia alters commensal microbial diversity throughout the murine gut. Infection and Immunity85(6).

Bartelt, L. A., Bolick, D. T., Mayneris-Perxachs, J., Kolling, G. L., Medlock, G. L., Zaenker, E. I., … & Singer, S. M. (2017). Cross-modulation of pathogen-specific pathways enhances malnutrition during enteric co-infection with Giardia lamblia and enteroaggregative Escherichia coli. PLoS Pathogens13(7), e1006471.

Batz, Z. A., Goff, A. C., & Armbruster, P. A. (2017). MicroRNAs are differentially abundant during Aedes albopictus diapause maintenance but not diapause induction. Insect Molecular Biology26(6), 721-733.

Brinsmade, S. R. (2017). CodY, a master integrator of metabolism and virulence in Gram-positive bacteria. Current Genetics63(3), 417-425.

Chamberlain, K. A., Chapey, K. S., Nanescu, S. E., & Huang, J. K. (2017). Creatine enhances mitochondrial-mediated oligodendrocyte survival after demyelinating injury. Journal of Neuroscience37(6), 1479-1492.

Coelho, C. H., Durigan, M., Leal, D. A. G., de Bernardi Schneider, A., Franco, R. M. B., & Singer, S. M. (2017). Giardiasis as a neglected disease in Brazil: Systematic review of 20 years of publications. PLoS Neglected Tropical Diseases11(10), e0006005.

Conant, K., Daniele, S., Bozzelli, P. L., Abdi, T., Edwards, A., Szklarczyk, A., … & Maguire-Zeiss, K. (2017). Matrix metalloproteinase activity stimulates N-cadherin shedding and the soluble N-cadherin ectodomain promotes classical microglial activation. Journal of Neuroinflammation14(1), 56.

Fischer, D. G., Wimp, G. M., Hersch‐Green, E., Bangert, R. K., LeRoy, C. J., Bailey, J. K., … & Whitham, T. G. (2017). Tree genetics strongly affect forest productivity, but intraspecific diversity–productivity relationships do not. Functional Ecology31(2), 520-529.

Franz, H. B., McAdam, A. C., Ming, D. W., Freissinet, C., Mahaffy, P. R., Eldridge, D. L., … & McLennan, S. M. (2017). Large sulfur isotope fractionations in Martian sediments at Gale Crater. Nature Geoscience10(9), 658-662.

Galezo, A. A., Krzyszczyk, E., & Mann, J. (2018). Sexual segregation in Indo-Pacific bottlenose dolphins is driven by female avoidance of males. Behavioral Ecology29(2), 377-386.

Huestis, D. L., Artis, M. L., Armbruster, P. A., & Lehmann, T. (2017). Photoperiodic responses of Sahelian malaria mosquitoes Anopheles coluzzii and An. arabiensis. Parasites & Vectors10(1), 621.

Jarvis, K. J., Allan, G. J., Craig, A. J., Beresic‐Perrins, R. K., Wimp, G., Gehring, C. A., & Whitham, T. G. (2017). Arthropod communities on hybrid and parental cottonwoods are phylogenetically structured by tree type: Implications for conservation of biodiversity in plant hybrid zones. Ecology and Evolution7(15), 5909-5921.

Johnson, S. S., Zaikova, E., Goerlitz, D. S., Bai, Y., & Tighe, S. W. (2017). Real-time DNA sequencing in the Antarctic dry valleys using the Oxford Nanopore sequencer. Journal of Biomolecular Techniques: JBT28(1), 2.

Kotsakiozi, P., Richardson, J. B., Pichler, V., Favia, G., Martins, A. J., Urbanelli, S., … & Caccone, A. (2017). Population genomics of the Asian tiger mosquito, Aedes albopictus: insights into the recent worldwide invasion. Ecology and Evolution7(23), 10143-10157.

Krzyszczyk, E., Patterson, E. M., Stanton, M. A., & Mann, J. (2017). The transition to independence: sex differences in social and behavioural development of wild bottlenose dolphins. Animal Behaviour129, 43-59.

Mann, J., & Karniski, C. (2017). Diving beneath the surface: long-term studies of dolphins and whales. Journal of Mammalogy98(3), 621-630.

Meineke, E. K., Holmquist, A. J., Wimp, G. M., & Frank, S. D. (2017). Changes in spider community composition are associated with urban temperature, not herbivore abundance. Journal of Urban Ecology, 3(1), juw010.

Michalski, J. R., Onstott, T. C., Mojzsis, S. J., Mustard, J., Chan, Q. H., Niles, P. B., & Johnson, S. S. (2018). The Martian subsurface as a potential window into the origin of life. Nature Geoscience11(1), 21-26.

Miketa, M. L., Krzyszczyk, E., & Mann, J. (2017). Behavioral responses to fishing line entanglement of a juvenile bottlenose dolphin in Shark Bay, Australia. Matters3(12), e201711000011.

Mogi, M., Armbruster, P. A., Tuno, N., Aranda, C., & Yong, H. S. (2017). The climate range expansion of Aedes albopictus (Diptera: Culicidae) in Asia inferred from the distribution of Albopictus subgroup species of Aedes (Stegomyia). Journal of Medical Entomology54(6), 1615-1625.

Munro, D. A., Hohenstein, P., Coate, T. M., & Davies, J. A. (2017). Refuting the hypothesis that semaphorin‐3f/neuropilin‐2 exclude blood vessels from the cap mesenchyme in the developing kidney. Developmental Dynamics246(12), 1047-1056.

Nooshadokht, M., Kalantari-Khandani, B., Sharifi, I., Kamyabi, H., Liyanage, N. P., Lagenaur, L. A., … & Solaymani-Mohammadi, S. (2017). Stool antigen immunodetection for diagnosis of Giardia duodenalis infection in human subjects with HIV and cancer. Journal of Microbiological Methods141, 35-41.

Oberhauser, K., Wiederholt, R., Diffendorfer, J. E., Semmens, D., Ries, L., Thogmartin, W. E., … & Semmens, B. (2017). A trans‐national monarch butterfly population model and implications for regional conservation priorities. Ecological Entomology42(1), 51-60.

Ries, L., Murphy, S. M., Wimp, G. M., & Fletcher, R. J. (2017). Closing persistent gaps in knowledge about edge ecology. Current Landscape Ecology Reports2(1), 30-41.

Rosenwald, L. C., Lill, J. T., Lind, E. M., & Weiss, M. R. (2017). Dynamics of host plant selection and host-switching by silver-spotted skipper caterpillars. Arthropod-Plant Interactions11(6), 833-842.

Sah, P., Leu, S. T., Cross, P. C., Hudson, P. J., & Bansal, S. (2017). Unraveling the disease consequences and mechanisms of modular structure in animal social networks. Proceedings of the National Academy of Sciences114(16), 4165-4170.

Salehi, P., Ge, M. X., Gundimeda, U., Michelle Baum, L., Lael Cantu, H., Lavinsky, J., … & Nikolakopoulou, A. M. (2017). Role of Neuropilin-1/Semaphorin-3A signaling in the functional and morphological integrity of the cochlea. PLoS Genetics13(10), e1007048.

Samuels, D. J., Wang, Z., Rhee, K. Y., & Brinsmade, S. R. (2017). A Tandem Liquid Chromatography–Mass Spectrometry-based Approach for Metabolite Analysis of Staphylococcus aureus. JoVE (Journal of Visualized Experiments), (121), e55558.

Strickland, K., Levengood, A., Foroughirad, V., Mann, J., Krzyszczyk, E., & Frère, C. H. (2017). A framework for the identification of long-term social avoidance in longitudinal datasets. Royal Society Open Science4(8), 170641.

Tighe, S., Afshinnekoo, E., Rock, T. M., McGrath, K., Alexander, N., McIntyre, A., … & Johnson, S. S. (2017). Genomic methods and microbiological technologies for profiling novel and extreme environments for the Extreme Microbiome Project (XMP). Journal of Biomolecular Techniques: JBT28(1), 31.

Wallen, M. M., Krzyszczyk, E., & Mann, J. (2017). Mating in a bisexually philopatric society: bottlenose dolphin females associate with adult males but not adult sons during estrous. Behavioral Ecology and Sociobiology71(10), 153.

Zhang, K. D., & Coate, T. M. (2017, May). Recent advances in the development and function of type II spiral ganglion neurons in the mammalian inner ear. In Seminars in Cell & Developmental Biology (Vol. 65, pp. 80-87). Academic Press.


Publications in 2016

Allen, M., Ghosh, S., Ahern, G. P., Villapol, S., Maguire-Zeiss, K. A., & Conant, K. (2016). Protease induced plasticity: matrix metalloproteinase-1 promotes neurostructural changes through activation of protease activated receptor 1. Scientific Reports6, 35497.

Babaei, Z., Malihi, N., Zia-Ali, N., Sharifi, I., Mohammadi, M. A., Kagnoff, M. F., … & Solaymani-Mohammadi, S. (2016). Adaptive immune response in symptomatic and asymptomatic enteric protozoal infection: evidence for a determining role of parasite genetic heterogeneity in host immunity to human giardiasis. Microbes and Infection18(11), 687-695.

Coelho, C. H., Costa, A. O., Silva, A. C. C., Pucci, M. M., Serufo, A. V., Busatti, H. G. N. O., … & Gomes, M. A. (2016). Genotyping and descriptive proteomics of a potential zoonotic canine strain of Giardia duodenalis, infective to mice. PloS One11(10), e0164946.

Ilyasov, A. A., Milligan, C. E., Pharr, E. P., & Howlett, A. C. (2018). The endocannabinoid system and oligodendrocytes in health and disease. Frontiers in Neuroscience12, 733.

Keselman, A., Li, E., Maloney, J., & Singer, S. M. (2016). The microbiota contributes to CD8+ T cell activation and nutrient malabsorption following intestinal infection with Giardia duodenalis. Infection and Immunity84(10), 2853-2860.

Li, E., Tako, E. A., & Singer, S. M. (2016). Complement activation by Giardia duodenalis parasites through the lectin pathway contributes to mast cell responses and parasite control. Infection and Immunity84(4), 1092-1099.

Manlik, O., McDonald, J. A., Mann, J., Raudino, H. C., Bejder, L., Krützen, M., … & Sherwin, W. B. (2016). The relative importance of reproduction and survival for the conservation of two dolphin populations. Ecology and Evolution6(11), 3496-3512.

Mann, J., & Karniski, C. (2017). Diving beneath the surface: long-term studies of dolphins and whales. Journal of Mammalogy98(3), 621-630.

Murphy, S. M., Battocletti, A. H., Tinghitella, R. M., Wimp, G. M., & Ries, L. (2016). Complex community and evolutionary responses to habitat fragmentation and habitat edges: what can we learn from insect science?. Current Opinion in Insect Science, 14, 61-65.

Patten, M. M. (2016). Epigenetics: Imprinting evolution in Arabidopsis. Nature Plants2(10), 1-2.

Patten, M. M., Cowley, M., Oakey, R. J., & Feil, R. (2016). Regulatory links between imprinted genes: evolutionary predictions and consequences. Proceedings of the Royal Society B: Biological Sciences283(1824), 20152760.

Psachoulia, K., Chamberlain, K. A., Heo, D., Davis, S. E., Paskus, J. D., Nanescu, S. E., … & Huang, J. K. (2016). IL4I1 augments CNS remyelination and axonal protection by modulating T cell driven inflammation. Brain139(12), 3121-3136.

Quach, J., Chadee, K., Mead, J. R., & Singer, S. M. (2016). Immunity to Intestinal Protozoa: Entamoeba, Cryptosporidium, and Giardia.

Rankin, R. W., Mann, J., Singh, L., Patterson, E. M., Krzyszczyk, E., & Bejder, L. (2016). The role of weighted and topological network information to understand animal social networks: a null model approach. Animal Behaviour113, 215-228.

Rydzewski, W. T., Carioscia, S. A., Liévano, G., Lynch, V. D., & Patten, M. M. (2016). Sexual antagonism and meiotic drive cause stable linkage disequilibrium and favour reduced recombination on the X chromosome. Journal of Evolutionary Biology29(6), 1247-1256.

Singer, S.M.,  J. G. Maloney and C. H. Coelho (2016) Chapter 40: Giardia lamblia. In Laboratory Models For Foodborne Infection. Taylor & Francis, New York. 

Singer, S. M. (2016). Control of giardiasis by interleukin-17 in humans and mice—are the questions all answered?. Clinical and Vaccine Immunology23(1), 2-5.

Solaymani‐Mohammadi, S., Lakhdari, O., Minev, I., Shenouda, S., Frey, B. F., Billeskov, R., … & Kagnoff, M. F. (2016). Lack of the programmed death‐1 receptor renders host susceptible to enteric microbial infection through impairing the production of the mucosal natural killer cell effector molecules. Journal of Leukocyte Biology99(3), 475-482.

Steidle, E. A., Chong, L. S., Wu, M., Crooke, E., Fiedler, D., Resnick, A. C., & Rolfes, R. J. (2016). A Novel Inositol Pyrophosphate Phosphatase in Saccharomyces cerevisiae Siw14 protein selectively cleaves the β-phosphate from 5-diphosphoinositol pentakisphosphate (5PP-IP5). Journal of Biological Chemistry291(13), 6772-6783.

Tosh, K. W., Mittereder, L., Bonne-Annee, S., Hieny, S., Nutman, T. B., Singer, S. M., … & Jankovic, D. (2016). The IL-12 response of primary human dendritic cells and monocytes to Toxoplasma gondii is stimulated by phagocytosis of live parasites rather than host cell invasion. The Journal of Immunology196(1), 345-356.

Walker, T., Huang, J., & Young, K. (2016). Neural stem and progenitor cells in nervous system function and therapy.

Wallen, M. M., Patterson, E. M., Krzyszczyk, E., & Mann, J. (2016). The ecological costs to females in a system with allied sexual coercion. Animal Behaviour115, 227-236.

Xie, T., Vora, A., Mulcahey, P. J., Nanescu, S. E., Singh, M., Choi, D. S., … & Hahm, J. I. (2016). Surface assembly configurations and packing preferences of fibrinogen mediated by the periodicity and alignment control of block copolymer nanodomains. ACS Nano10(8), 7705-7720.


Publications in 2015

Belitsky, B. R., Brinsmade, S. R., & Sonenshein, A. L. (2015). Intermediate levels of Bacillus subtilis CodY activity are required for derepression of the branched-chain amino acid permease, BraB. PLoS Genet11(10), e1005600.

Carroll, I. T., & Bansal, S. (2016). Livestock market data for modeling disease spread among US cattle. bioRxiv, 021980.

Cayton, H. L., Haddad, N. M., Gross, K., Diamond, S. E., & Ries, L. (2015). Do growing degree days predict phenology across butterfly species?. Ecology96(6), 1473-1479.

Cepero, L. C., Rosenwald, L. C., & Weiss, M. R. (2015). The relative importance of flower color and shape for the foraging monarch butterfly (Lepidoptera: Nymphalidae). Journal of Insect Behavior28(4), 499-511.

Chen, X. G., Jiang, X., Gu, J., Xu, M., Wu, Y., Deng, Y., … & Armbruster, P. (2015). Genome sequence of the Asian Tiger mosquito, Aedes albopictus, reveals insights into its biology, genetics, and evolution. Proceedings of the National Academy of Sciences112(44), E5907-E5915.

Coate, T. M., Spita, N. A., Zhang, K. D., Isgrig, K. T., & Kelley, M. W. (2015). Neuropilin-2/Semaphorin-3F-mediated repulsion promotes inner hair cell innervation by spiral ganglion neurons. Elife4, e07830.

Daniele, S. G., Béraud, D., Davenport, C., Cheng, K., Yin, H., & Maguire-Zeiss, K. A. (2015). Activation of MyD88-dependent TLR1/2 signaling by misfolded α-synuclein, a protein linked to neurodegenerative disorders. Science signaling8(376), ra45-ra45.

Dinsdale, E., Elgin, S. C., Grandgenett, N., Morgan, W., Rosenwald, A., Tapprich, W., … & Pauley, M. A. (2015). NIBLSE: A network for integrating bioinformatics into life sciences education. CBE—Life Sciences Education14(4), le3.

Eames, K., Bansal, S., Frost, S., & Riley, S. (2015). Six challenges in measuring contact networks for use in modelling. Epidemics10, 72-77.

de la Fuente, A. G., Errea, O., van Wijngaarden, P., Gonzalez, G. A., Kerninon, C., Jarjour, A. A., … & Huang, J. K. (2015). Vitamin D receptor–retinoid X receptor heterodimer signaling regulates oligodendrocyte progenitor cell differentiation. Journal of Cell Biology211(5), 975-985.

Funk, S., Bansal, S., Bauch, C. T., Eames, K. T., Edmunds, W. J., Galvani, A. P., & Klepac, P. (2015). Nine challenges in incorporating the dynamics of behaviour in infectious diseases models. Epidemics10, 21-25.

Ghosh, A. K., Wangsanut, T., Fonzi, W. A., & Rolfes, R. J. (2015). The GRF10 homeobox gene regulates filamentous growth in the human fungal pathogen Candida albicans. FEMS Yeast Research15(8), fov093.

Hannaford, A., Rosenwald, A., Carroll, L.M., Vijh, E., Kelly, B.B. (2015) Case Competitions: a New Frontier in Inter-Professional Health Education? MedEdPublish. pp. 1–14.

Heesterbeek, H., Anderson, R. M., Andreasen, V., Bansal, S., De Angelis, D., Dye, C., … & Hollingsworth, T. D. (2015). Modeling infectious disease dynamics in the complex landscape of global health. Science347(6227).

Huang, X., Poelchau, M. F., & Armbruster, P. A. (2015). Global transcriptional dynamics of diapause induction in non-blood-fed and blood-fed Aedes albopictus. PLoS Negl Trop Dis9(4), e0003724.

Johnson, S. S., Chevrette, M. G., Ehlmann, B. L., & Benison, K. C. (2015). Insights from the metagenome of an acid salt lake: the role of biology in an extreme depositional environment. PLoS One10(4), e0122869.

Kramer, S. C., & Bansal, S. (2015). Assessing the use of antiviral treatment to control influenza. Epidemiology & Infection143(8), 1621-1631.

Lee, E. C., Viboud, C., Simonsen, L., Khan, F., & Bansal, S. (2015). Detecting signals of seasonal influenza severity through age dynamics. BMC Infectious Diseases15(1), 587.

Maloney, J., Keselman, A., Li, E., & Singer, S. M. (2015). Macrophages expressing arginase 1 and nitric oxide synthase 2 accumulate in the small intestine during Giardia lamblia infection. Microbes and infection17(6), 462-467.

Mann, J., & Singh, L. (2015). Culture, diffusion, and networks in social animals. Emerging Trends in the Social and Behavioral Sciences: An Interdisciplinary, Searchable, and Linkable Resource, 1-16.

Mogi, M., Armbruster, P., Tuno, N., Campos, R., & Eritja, R. (2015). Simple indices provide insight to climate attributes delineating the geographic range of Aedes albopictus (Diptera: Culicidae) prior to worldwide invasion. Journal of Medical Entomology52(4), 647-657.

Moyon, S., Dubessy, A. L., Aigrot, M. S., Trotter, M., Huang, J. K., Dauphinot, L., … & Lubetzki, C. (2015). Demyelination causes adult CNS progenitors to revert to an immature state and express immune cues that support their migration. Journal of Neuroscience35(1), 4-20.

Nelson, T. M., Apprill, A., Mann, J., Rogers, T. L., & Brown, M. V. (2015). The marine mammal microbiome: current knowledge and future directions. Microbiology Australia36(1), 8-13.

Ries, L., & Oberhauser, K. (2015). A citizen army for science: quantifying the contributions of citizen scientists to our understanding of monarch butterfly biology. BioScience65(4), 419-430.

Oberhauser, K., Ries, L., Altizer, S., Ekstrum, J., Garland, M., Howard, E., Jepsen, S., Lovett, J., Monroe, M., Morris, G., et al. (2015) Citizen scientists and an iconic insect: 70 years and counting. In Monarchs in a changing world: Biology and conservation of an iconic butterfly. Cornell University Press, Ithaca. 

Patten, M. M., Carioscia, S. A., & Linnen, C. R. (2015). Biased introgression of mitochondrial and nuclear genes: a comparison of diploid and haplodiploid systems. Molecular Ecology24(20), 5200-5210.

Patterson, E. M., Krzyszczyk, E., & Mann, J. (2016). Age-specific foraging performance and reproduction in tool-using wild bottlenose dolphins. Behavioral Ecology27(2), 401-410.

Patterson, E. M., & Mann, J. (2015). Cetacean innovation. In Animal Creativity and Innovation (pp. 73-125). Academic Press.

Pellis, L., Ball, F., Bansal, S., Eames, K., House, T., Isham, V., & Trapman, P. (2015). Eight challenges for network epidemic models. Epidemics10, 58-62.

Pomeroy, L. W., Bansal, S., Tildesley, M., Moreno‐Torres, K. I., Moritz, M., Xiao, N., … & Garabed, R. B. (2017). Data‐Driven Models of Foot‐and‐Mouth Disease Dynamics: A Review. Transboundary and Emerging Diseases64(3), 716-728.

Quevillon, L. E., Hanks, E. M., Bansal, S., & Hughes, D. P. (2015). Social, spatial, and temporal organization in a complex insect society. Scientific Reports5, 13393.

Raguso, R., & Weiss, M. R. (2015). Concerted changes in floral colour and scent, and the importance of spatio-temporal variation in floral volatiles. Journal of the Indian Institute of Science95(1), 69-92.

Ries, L., Oberhauser, K., Taron, D., Battin, J., Rendon-Salinas, E., Altizer, S., & Nail, K. (2015). Connecting eastern monarch population dynamics across their migratory cycle. Monarchs in a Changing World: Biology and Conservation of an Iconic Insect. Cornell University Press, Ithaca, NY, 268-281.

Ries, L., Taron, D. J., & Rendón-Salinas, E. (2015). The disconnect between summer and winter monarch trends for the eastern migratory population: Possible links to differing drivers. Annals of the Entomological Society of America108(5), 691-699.

Ries, L., & Oberhauser, K. (2015). A citizen army for science: quantifying the contributions of citizen scientists to our understanding of monarch butterfly biology. BioScience65(4), 419-430.

Leung, W., Shaffer, C. D., Reed, L. K., Smith, S. T., Barshop, W., Dirkes, W., … & Yuan, H. (2015). Drosophila Muller F elements maintain a distinct set of genomic properties over 40 million years of evolution. G3: Genes, Genomes, Genetics5(5), 719-740.

Saritas-Yildirim, B., Childers, C. P., Elsik, C. G., & Silva, E. M. (2015). Identification of REST targets in the Xenopus tropicalis genome. BMC Genomics16(1), 380.

Sassi, M., Sharma, D., Brinsmade, S. R., Felden, B., & Augagneur, Y. (2015). Genome sequence of the clinical isolate Staphylococcus aureus subsp. aureus strain UAMS-1. Genome announcements3(1).

Taron, D., & Ries, L. (2015). Butterfly monitoring for Conservation. In Butterfly Conservation in North America (pp. 35-57). Springer, Dordrecht.

Úbeda, F., Patten, M. M., & Wild, G. (2015). On the origin of sex chromosomes from meiotic drive. Proceedings of the Royal Society B: Biological Sciences282(1798), 20141932.

Whittington, N., Cunningham, D., Le, T. K., De Maria, D., & Silva, E. M. (2015). Sox21 regulates the progression of neuronal differentiation in a dose-dependent manner. Developmental biology397(2), 237-247.


Publications in 2014

Aiello, C. M., Nussear, K. E., Walde, A. D., Esque, T. C., Emblidge, P. G., Sah, P., … & Hudson, P. J. (2014). Disease dynamics during wildlife translocations: disruptions to the host population and potential consequences for transmission in desert tortoise contact networks. Animal Conservation17, 27-39.

Arora, G., Russell, J., Rosenwald, A.. Leaving the science behind: A failure resulting from poor curriculum design. Journal of Interactive Technology and Pedagogy

Brinsmade, S. R., Alexander, E. L., Livny, J., Stettner, A. I., Segrè, D., Rhee, K. Y., & Sonenshein, A. L. (2014). Hierarchical expression of genes controlled by the Bacillus subtilis global regulatory protein CodY. Proceedings of the National Academy of Sciences111(22), 8227-8232.

Cords, M., & Mann, J. (2014). Social conflict management in primates: is there a case for dolphins?. In Primates and Cetaceans (pp. 207-212). Springer, Tokyo.

Cunningham, D., & Casey, E. S. (2014). Spatiotemporal development of the embryonic nervous system of Saccoglossus kowalevskii. Developmental Biology386(1), 252-263.

Daniele, S. G., Edwards, A. A., & Maguire-Zeiss, K. A. (2014). Isolation of cortical microglia with preserved immunophenotype and functionality from murine neonates. Journal of Visualized Experiments, (83), e51005.

Denlinger, D. L., & Armbruster, P. A. (2014). Mosquito diapause. Annual Review of Entomology59, 73-93.

Diamond, S. E., Cayton, H., Wepprich, T., Jenkins, C. N., Dunn, R. R., Haddad, N. M., & Ries, L. (2014). Unexpected phenological responses of butterflies to the interaction of urbanization and geographic temperature. Ecology95(9), 2613-2621.

Diffendorfer, J. E., Loomis, J. B., Ries, L., Oberhauser, K., Lopez‐Hoffman, L., Semmens, D., … & Wiederholt, R. (2014). National valuation of monarch butterflies indicates an untapped potential for incentive‐based conservation. Conservation Letters7(3), 253-262.

Haig, D., Ubeda, F., & Patten, M. M. (2014). Specialists and generalists: the sexual ecology of the genome. Cold Spring Harbor Perspectives in Biology6(9), a017525.

Huang, C. C., Bose, J. K., Majumder, P., Lee, K. H., Huang, J. T. J., Huang, J. K., & Shen, C. K. J. (2014). Metabolism and mis-metabolism of the neuropathological signature protein TDP-43. Journal of Cell Science127(14), 3024-3038.

Johnson, S.S. (2014) O-Rings. In The Best American Science and Nature Writing (pp. 107-114). Houghton Mifflin Harcourt, Boston.

Karniski, Caitlin, Eric M. Patterson, Ewa Krzyszczyk, Vivienne Foroughirad, Margaret A. Stanton, and Janet Mann. “A comparison of survey and focal follow methods for estimating individual activity budgets of cetaceans.” Marine Mammal Science 31, no. 3 (2015): 839-852.

Kopps, A. M., Ackermann, C. Y., Sherwin, W. B., Allen, S. J., Bejder, L., & Krützen, M. (2014). Cultural transmission of tool use combined with habitat specializations leads to fine-scale genetic structure in bottlenose dolphins. Proceedings of the Royal Society B: Biological Sciences281(1782), 20133245.

Kriel, A., Brinsmade, S. R., Jessica, L. T., Tehranchi, A. K., Bittner, A. N., Sonenshein, A. L., & Wang, J. D. (2014). GTP dysregulation in Bacillus subtilis cells lacking (p) ppGpp results in phenotypic amino acid auxotrophy and failure to adapt to nutrient downshift and regulate biosynthesis genes. Journal of Bacteriology196(1), 189-201.

Krützen, M., Kreicker, S., MacLeod, C. D., Learmonth, J., Kopps, A. M., Walsham, P., & Allen, S. J. (2014). Cultural transmission of tool use by Indo-Pacific bottlenose dolphins (Tursiops sp.) provides access to a novel foraging niche. Proceedings of the Royal Society B: Biological Sciences281(1784), 20140374.

Li, E., Liu, M., & Singer, S. M. (2014). Resistance to reinfection in mice as a vaccine model for giardiasis. Human Vaccines & Immunotherapeutics10(6), 1536-1543.

Mann, J., & Würsig, B. (2014). Observing and quantifying cetacean behavior in the wild: current problems, limitations, and future directions. In Primates and Cetaceans (pp. 335-344). Springer, Tokyo.

Patten, M. M., Ross, L., Curley, J. P., Queller, D. C., Bonduriansky, R., & Wolf, J. B. (2014). The evolution of genomic imprinting: theories, predictions and empirical tests. Heredity113(2), 119-128.

Patten, M. M. (2014). Meiotic drive influences the outcome of sexually antagonistic selection at a linked locus. Journal of Evolutionary Biology27(11), 2360-2370.

Poelchau, M. F., Huang, X., Goff, A., Reynolds, J., & Armbruster, P. (2014). An experimental and bioinformatics protocol for RNA-seq analyses of photoperiodic diapause in the Asian Tiger mosquito, Aedes albopictus. Journal of Visualized Experiments (93), e51961.

Raft, S., Coate, T. M., Kelley, M. W., Crenshaw III, E. B., & Wu, D. K. (2014). Pou3f4-mediated regulation of ephrin-b2 controls temporal bone development in the mouse. PloS One9(10), e109043.

Rosenwald, A. G., Murray, B., Toth, T., Madupu, R., Kyrillos, A., & Arora, G. (2014). Evidence for horizontal gene transfer between Chlamydophila pneumoniae and Chlamydia phage. Bacteriophage4(4), e965076.

Sah, P., Singh, L. O., Clauset, A., & Bansal, S. (2014). Exploring community structure in biological networks with random graphs. BMC Bioinformatics15(1), 1-14.

Saritas‐Yildirim, B., & Silva, E. M. (2014). The role of targeted protein degradation in early neural development. Genesis52(4), 287-299.’

Shaffer, C. D., Alvarez, C. J., Bednarski, A. E., Dunbar, D., Goodman, A. L., Reinke, C., … & Bazinet, C. (2014). A course-based research experience: how benefits change with increased investment in instructional time. CBE—Life Sciences Education13(1), 111-130.

Singh, L.O., Mann, J. (2014) Modeling social preferences based on social interactions. In: Encyclopedia of Social Networks and Data Mining. Springer-Verlag, New York, New York.

Stanton, M., Mann, J. (2014) Social Network Analysis: Applications to primate and cetacean societies. In Primates and CetaceansField Research and Conservation of Complex Mammalian Societies. pp. 345-354, Springer, New York. 

Stanton, M., Mann, J. (2014) Shark Bay bottlenose dolphins: A case study for defining and measuring

sociality. Applications to primate and cetacean societies. In Primates and CetaceansField Research and Conservation of Complex Mammalian Societies. pp. 345-354, Springer, New York. 

Tsai, Y. J. J., Barrows, E. M., & Weiss, M. R. (2014). Pure Self‐Assessment of Size During Male–Male Contests in the Parasitoid Wasp N asonia vitripennis. Ethology120(8), 816-824.

Tsai, Y. J. J., Barrows, E. M., & Weiss, M. R. (2014). Why do larger and older males win contests in the parasitoid wasp Nasonia vitripennis?. Animal Behaviour91, 151-159.


Publications in 2013

Arab, A., & Wimp, G. M. (2013). Plant production and alternate prey channels impact the abundance of top predators. Oecologia173(2), 331-341.

Bartelt, L. A., Roche, J., Kolling, G., Bolick, D., Noronha, F., Naylor, C., … & Guerrant, R. (2013). Persistent G. lamblia impairs growth in a murine malnutrition model. The Journal of Clinical Investigation123(6), 2672-2684.

Butler, L. K., Ries, L., Bisson, I. A., Hayden, T. J., Wikelski, M. M., & Romero, L. M. (2013). Opposite but analogous effects of road density on songbirds with contrasting habitat preferences. Animal Conservation16(1), 77-85.

Béraud, D., Hathaway, H. A., Trecki, J., Chasovskikh, S., Johnson, D. A., Johnson, J. A., … & Maguire-Zeiss, K. A. (2013). Microglial activation and antioxidant responses induced by the Parkinson’s disease protein α-synuclein. Journal of Neuroimmune Pharmacology8(1), 94-117.

Camacho, A., Huang, J. K., Delint‐Ramirez, I., Yew Tan, C., Fuller, M., Lelliott, C. J., … & Franklin, R. J. (2013). Peroxisome proliferator‐activated receptor gamma‐coactivator‐1 alpha coordinates sphingolipid metabolism, lipid raft composition and myelin protein synthesis. European Journal of Neuroscience38(5), 2672-2683.

Coate, T. M., & Kelley, M. W. (2013, May). Making connections in the inner ear: recent insights into the development of spiral ganglion neurons and their connectivity with sensory hair cells. In Seminars in Cell & Developmental Biology (Vol. 24, No. 5, pp. 460-469). Academic Press.

Dowling, Z., Ladeau, S. L., Armbruster, P., Biehler, D., & Leisnham, P. T. (2013). Socioeconomic status affects mosquito (Diptera: Culicidae) larval habitat type availability and infestation level. Journal of Medical Entomology50(4), 764-772.

Dowling, Z., Armbruster, P., LaDeau, S. L., DeCotiis, M., Mottley, J., & Leisnham, P. T. (2013). Linking mosquito infestation to resident socioeconomic status, knowledge, and source reduction practices in suburban Washington, DC. Ecohealth10(1), 36-47.

Driver, E. C., Sillers, L., Coate, T. M., Rose, M. F., & Kelley, M. W. (2013). The Atoh1-lineage gives rise to hair cells and supporting cells within the mammalian cochlea. Developmental Biology376(1), 86-98.

Foroughirad, V., & Mann, J. (2013). Long-term impacts of fish provisioning on the behavior and survival of wild bottlenose dolphins. Biological Conservation160, 242-249.

Gatti, J. W., Smithgall, M. C., Paranjape, S. M., Rolfes, R. J., & Paranjape, M. (2013). Using electrospun poly (ethylene-oxide) nanofibers for improved retention and efficacy of bacteriolytic antibiotics. Biomedical Microdevices15(5), 887-893.

Kopps, A. M., Krützen, M., Allen, S. J., Bacher, K., & Sherwin, W. B. (2014). Characterizing the socially transmitted foraging tactic “sponging” by bottlenose dolphins (Tursiops sp.) in the western gulf of Shark Bay, Western Australia. Marine Mammal Science30(3), 847-863.

Mann, J., & Patterson, E. M. (2013). Tool use by aquatic animals. Philosophical Transactions of the Royal Society B: Biological Sciences368(1630), 20120424.

Martin, R., Safaee, S. D., Somsamouth, K., Mounivong, B., Sinclair, R., Bansal, S., & Singh, P. N. (2013). Mixed methods pilot study of sharing behaviors among waterpipe smokers of rural Lao PDR: implications for infectious disease transmission. International Journal of Environmental Research and Public Health10(6), 2120-2132.

Patten, M. M., Úbeda, F., & Haig, D. (2013). Sexual and parental antagonism shape genomic architecture. Proceedings of the Royal Society B: Biological Sciences280(1770), 20131795.

Poelchau, M. F., Reynolds, J. A., Elsik, C. G., Denlinger, D. L., & Armbruster, P. A. (2013). RNA-Seq reveals early distinctions and late convergence of gene expression between diapause and quiescence in the Asian tiger mosquito, Aedes albopictus. Journal of Experimental Biology216(21), 4082-4090.

Poelchau, M. F., Reynolds, J. A., Elsik, C. G., Denlinger, D. L., & Armbruster, P. A. (2013). Deep sequencing reveals complex mechanisms of diapause preparation in the invasive mosquito, Aedes albopictus. Proceedings of the Royal Society B: Biological Sciences280(1759), 20130143.

Poelchau, M. F., Reynolds, J. A., Denlinger, D. L., Elsik, C. G., & Armbruster, P. A. (2013). Transcriptome sequencing as a platform to elucidate molecular components of the diapause response in the Asian tiger mosquito Aedes albopictus. Physiological Entomology38(2), 173-181.

Solaymani-Mohammadi, S., & Singer, S. M. (2013). Regulation of intestinal epithelial cell cytoskeletal remodeling by cellular immunity following gut infection. Mucosal Immunology6(2), 369-378.

Stack, J. C., Bansal, S., Kumar, V. A., & Grenfell, B. (2013). Inferring population-level contact heterogeneity from common epidemic data. Journal of the Royal Society Interface10(78), 20120578.

Syed, Y. A., Baer, A., Hofer, M. P., González, G. A., Rundle, J., Myrta, S., … & Lubec, G. (2013). Inhibition of phosphodiesterase‐4 promotes oligodendrocyte precursor cell differentiation and enhances CNS remyelination. EMBO Molecular Medicine5(12), 1918-1934.

Tako, E. A., Hassimi, M. F., Li, E., & Singer, S. M. (2013). Transcriptomic analysis of the host response to Giardia duodenalis infection reveals redundant mechanisms for parasite control. MBio4(6).

Uma, D., Durkee, C., Herzner, G., & Weiss, M. (2013). Double deception: ant-mimicking spiders elude both visually-and chemically-oriented predators. PloS One8(11), e79660.

Wimp, G. M., Murphy, S. M., Lewis, D., Douglas, M. R., Ambikapathi, R., Gratton, C., & Denno, R. F. (2013). Predator hunting mode influences patterns of prey use from grazing and epigeic food webs. Oecologia171(2), 505-515.


Publications in 2012

Bansal, S., & Meyers, L. A. (2012). The impact of past epidemics on future disease dynamics. Journal of Theoretical Biology309, 176-184.

Barrows EM, Howard AE, & Steury BW. (2012) Fruit production and phenology of Phacelia covillei S.

Watson (Hydrophyllaceae) in the Potomac Gorge area of Maryland and Virginia. Marilandica. 3(1).

Braasch, J., Wimp, G. M., & Kaplan, I. (2012). Testing for phytochemical synergism: arthropod community responses to induced plant volatile blends across crops. Journal of Chemical Ecology38(10), 1264-1275.

Béraud, D., & Maguire-Zeiss, K. A. (2012). Misfolded α-synuclein and toll-like receptors: therapeutic targets for Parkinson’s disease. Parkinsonism & Related Disorders18, S17-S20.

Coate, T. M., Raft, S., Zhao, X., Ryan, A. K., Crenshaw III, E. B., & Kelley, M. W. (2012). Otic mesenchyme cells regulate spiral ganglion axon fasciculation through a Pou3f4/EphA4 signaling pathway. Neuron73(1), 49-63.

Conant, K., T Lim, S., Randall, B., & A Maguire-Zeiss, K. (2012). Matrix metalloproteinase dependent cleavage of cell adhesion molecules in the pathogenesis of CNS dysfunction with HIV and methamphetamine. Current HIV research10(5), 384-391.

Fagan WF, & Ries L. (2012) Edge effects. Berkshire Encyclopedia of Sustainability. Great Barrington, MA (5) 118–124.

Huang, J. K., & Franklin, R. J. (2012). Current status of myelin replacement therapies in multiple sclerosis.  Progress in Brain Research (Vol. 201, pp. 219-231). Elsevier.

Huang, J. K., Ferrari, C. C., de Castro, G. M., Lafont, D., Zhao, C., Zaratin, P., … & Franklin, R. J. (2012). Accelerated axonal loss following acute CNS demyelination in mice lacking protein tyrosine phosphatase receptor type Z. The American Journal of Pathology181(5), 1518-1523.

Kamda, J. D., Nash, T. E., & Singer, S. M. (2012). Giardia duodenalis: dendritic cell defects in IL-6 deficient mice contribute to susceptibility to intestinal infection. Experimental Parasitology130(3), 288-291.

Kopps, A. M., & Sherwin, W. B. (2012). Modelling the emergence and stability of a vertically transmitted cultural trait in bottlenose dolphins. Animal Behaviour84(6), 1347-1362.

Krzyszczyk, E., Kopps, A. M., Bacher, K., Smith, H., Stephens, N., Meighan, N. A., & Mann, J. (2013). A report on six cases of seagrass-associated gastric impaction in bottlenose dolphins (Tursiops sp.). Marine Mammal Science29(3), 548-554.

Krzyszczyk, E., & Mann, J. (2012). Why become speckled? Ontogeny and function of speckling in Shark Bay bottlenose dolphins (Tursiops sp.) 1. Marine Mammal Science28(2), 295-307.

Manlandro, C. M. A., Palanivel, V. R., Schorr, E. B., Mihatov, N., Antony, A. A., & Rosenwald, A. G. (2012). Mon2 is a negative regulator of the monomeric G protein, Arl1. FEMS yeast research12(6), 637-650.

Mann, J., Stanton, M. A., Patterson, E. M., Bienenstock, E. J., & Singh, L. O. (2012). Social networks reveal cultural behaviour in tool-using dolphins. Nature Communications3(1), 1-8.

Meneses, N., Bailey, J. K., Allan, G. J., Bangert, R. K., Bowker, M. A., Rehill, B. J., … & Whitham, T. G. (2012). Arthropod community similarity in clonal stands of aspen: a test of the genetic similarity rule. Ecoscience19(1), 48-58.

Mogi, M., Armbruster, P., & Fonseca, D. M. (2014). Analyses of the northern distributional limit of Aedes albopictus (Diptera: Culicidae) with a simple thermal index. Journal of Medical Entomology49(6), 1233-1243.

Murphy, S. M., Wimp, G. M., Lewis, D., & Denno, R. F. (2012). Nutrient presses and pulses differentially impact plants, herbivores, detritivores and their natural enemies. PloS One7(8), e43929.

North, H. A., Clifford, M. A., & Donoghue, M. J. (2013). ‘Til Eph do us part’: intercellular signaling via Eph receptors and ephrin ligands guides cerebral cortical development from birth through maturation. Cerebral Cortex23(8), 1765-1773.

Patterson, E. M., & Mann, J. (2012). Look, no hands!. Behavioral and Brain Sciences35(4), 235.

Reynolds, J. A., Poelchau, M. F., Rahman, Z., Armbruster, P. A., & Denlinger, D. L. (2012). Transcript profiling reveals mechanisms for lipid conservation during diapause in the mosquito, Aedes albopictus. Journal of Insect Physiology58(7), 966-973.

Rodrigues, D., & Weiss, M. R. (2012). Reward Tracking and Memory Decay in the Monarch Butterfly, D anaus plexippus L.(L epidoptera: N ymphalidae). Ethology118(11), 1122-1131.

Romanowski, K., Zaborin, A., Valuckaite, V., Rolfes, R. J., Babrowski, T., Bethel, C., … & Alverdy, J. C. (2012). Candida albicans isolates from the gut of critically ill patients respond to phosphate limitation by expressing filaments and a lethal phenotype. PLoS One7(1), e30119.

Rosenwald, A. G., Russell, J. S., & Arora, G. (2012). The genome solver website: a virtual space fostering high impact practices for undergraduate biology. Journal of Microbiology & Biology Education: JMBE13(2), 188.

Rosenwald, A. G., Arora, G. S., Madupu, R., Roecklein-Canfield, J., & Russell, J. S. (2012). The human microbiome project: an opportunity to engage undergraduates in research. Procedia Computer Science9, 540-549.

Soykan, C. U., Brand, L. A., Ries, L., Stromberg, J. C., Hass, C., Simmons Jr, D. A., … & Sabo, J. L. (2012). Multitaxonomic diversity patterns along a desert riparian–upland gradient. PLoS One7(1), e28235.

Stanton, M. A., & Mann, J. (2012). Early social networks predict survival in wild bottlenose dolphins. PloS One7(10), e47508.

Summa, K., Urbanski, J. M., Zhao, X., Poelchau, M., & Armbruster, P. (2012). Cloning and sequence analysis of the circadian clock genes period and timeless in Aedes albopictus (Diptera: Culicidae). Journal of Medical Entomology49(3), 777-782.

Tsai, Y. J. J., & Mann, J. (2013). Dispersal, philopatry, and the role of fission‐fusion dynamics in bottlenose dolphins. Marine Mammal Science29(2), 261-279.

Uma, D. B., & Weiss, M. R. (2012). Flee or fight: ontogenetic changes in the behavior of cobweb spiders in encounters with spider-hunting wasps. Environmental Entomology41(6), 1474-1480.

Urbanski, J., Mogi, M., O’Donnell, D., DeCotiis, M., Toma, T., & Armbruster, P. (2012). Rapid adaptive evolution of photoperiodic response during invasion and range expansion across a climatic gradient. The American Naturalist179(4), 490-500.

Ydenberg, C. A., Stein, R. A., & Rose, M. D. (2012). Cdc42p and Fus2p act together late in yeast cell fusion. Molecular Biology of the Cell23(7), 1208-1218.

Zipkin, E. F., Ries, L., Reeves, R., Regetz, J., & Oberhauser, K. S. (2012). Tracking climate impacts on the migratory monarch butterfly. Global Change Biology18(10), 3039-3049.


Publications in 2011

Archer, T. C., Jin, J., & Casey, E. S. (2011). Interaction of Sox1, Sox2, Sox3 and Oct4 during primary neurogenesis. Developmental Biology350(2), 429-440.

Bansal, S., Bhowmick, S., & Paymal, P. (2011). Fast community detection for dynamic complex networks. In Complex Networks (pp. 196-207). Springer, Berlin, Heidelberg.

Barrows, E. M. (2011). Animal behavior desk reference: a dictionary of animal behavior, ecology, and evolution. CRC Press.

Barrows EM, Howard AF, & Steury BW (2011). Phenology, insect associates, and fruiting of Valeriana

Pauciflora michaux (Valerianaceae) in the Potomac River Gorge area of Maryland and Virginia, United States. Marilandica. 2(2), 6–10.

Blackiston, D., Briscoe, A. D., & Weiss, M. R. (2011). Color vision and learning in the monarch butterfly, Danaus plexippus (Nymphalidae). Journal of Experimental Biology214(3), 509-520.

Brinsmade, S. R., & Sonenshein, A. L. (2011). Dissecting complex metabolic integration provides direct genetic evidence for CodY activation by guanine nucleotides. Journal of Bacteriology193(20), 5637-5648.

Béraud, D., Twomey, M., Bloom, B., Mittereder, A., Neitzke, K., Ton, V., … & Maguire-Zeiss, K. A. (2011). α-Synuclein alters toll-like receptor expression. Frontiers in Neuroscience5, 80.

Clifford, M. A., Kanwal, J. K., Dzakpasu, R., & Donoghue, M. J. (2011). EphA4 expression promotes network activity and spine maturation in cortical neuronal cultures. Neural Development6(1), 21.

Conant, K., Lonskaya, I., Szklarczyk, A., Krall, C., Steiner, J., Maguire‐Zeiss, K., & Lim, S. T. (2011). Methamphetamine‐associated cleavage of the synaptic adhesion molecule intercellular adhesion molecule‐5. Journal of Neurochemistry118(4), 521-532.

Connor, R. C., Watson-Capps, J. J., Sherwin, W. B., & Krützen, M. (2011). A new level of complexity in the male alliance networks of Indian Ocean bottlenose dolphins (Tursiops sp.). Biology Letters7(4), 623-626.

Durkee, C. A., Weiss, M. R., & Uma, D. B. (2011). Ant mimicry lessens predation on a North American jumping spider by larger salticid spiders. Environmental Entomology40(5), 1223-1231.

Fell, G. L., Munson, A. M., Croston, M. A., & Rosenwald, A. G. (2011). Identification of yeast genes involved in K+ homeostasis: loss of membrane traffic genes affects K+ uptake. G3: Genes, Genomes, Genetics1(1), 43-56.

Feng, L. R., & Maguire-Zeiss, K. A. (2011). Dopamine and paraquat enhance α-synuclein-induced alterations in membrane conductance. Neurotoxicity Research20(4), 387.

Frère, C. H., Mann, J., Krützen, M., Connor, R. C., Bejder, L., & Sherwin, W. B. (2011). Nature and nurture: a step towards investigating their interactions in the wild. Communicative & Integrative Biology4(2), 192-193.

Huang, J. K., Jarjour, A. A., Oumesmar, B. N., Kerninon, C., Williams, A., Krezel, W., … & Chambon, P. (2011). Retinoid X receptor gamma signaling accelerates CNS remyelination. Nature Neuroscience14(1), 45-53.

Huang, J. K., Fancy, S. P., Zhao, C., Rowitch, D. H., & Franklin, R. J. (2011). Myelin regeneration in multiple sclerosis: targeting endogenous stem cells. Neurotherapeutics8(4), 650-658.

Huang, J. K., Jarjour, A. A., Ffrench-Constant, C., & Franklin, R. J. (2011). Retinoid X receptors as a potential avenue for regenerative medicine in multiple sclerosis. Expert Review of Neurotherapeutics11(4), 467-468.

Huang, J. K., & Franklin, R. J. (2011). Regenerative medicine in multiple sclerosis: identifying pharmacological targets of adult neural stem cell differentiation. Neurochemistry International59(3), 329-332.

Immler, S., Hamilton, M. B., Poslusny, N. J., Birkhead, T. R., & Epifanio, J. M. (2011). Post‐mating reproductive barriers in two unidirectionally hybridizing sunfish (Centrarchidae: Lepomis). Journal of Evolutionary Biology24(1), 111-120.

Koenig, W. D., Ries, L., Olsen, V. B. K., & Liebhold, A. M. (2011). Avian predators are less abundant during periodical cicada emergences, but why?. Ecology92(3), 784-790.

Leviyang, S., & Hamilton, M. B. (2011). Properties of Weir and Cockerham’s Fst estimators and associated bootstrap confidence intervals. Theoretical Population Biology79(1-2), 39-52.

Lima, B. P., Antelmann, H., Gronau, K., Chi, B. K., Becher, D., Brinsmade, S. R., & Wolfe, A. J. (2011). Involvement of protein acetylation in glucose‐induced transcription of a stress‐responsive promoter. Molecular Microbiology81(5), 1190-1204.

Mallory, H. S., & Weiss, M. R. (2011). Science in your own backyard: using locally abundant caterpillars & plants to teach about herbivory. The American Biology Teacher73(8), 463-466.

Patterson, E. M., & Mann, J. (2011). The ecological conditions that favor tool use and innovation in wild bottlenose dolphins (Tursiops sp.). PLoS One6(7), e22243.

Poelchau, M. F., Reynolds, J. A., Denlinger, D. L., Elsik, C. G., & Armbruster, P. A. (2011). A de novo transcriptome of the Asian tiger mosquito, Aedes albopictus, to identify candidate transcripts for diapause preparation. BMC Genomics12(1), 619.

Rogers, C. D., Ferzli, G. S., & Casey, E. S. (2011). The response of early neural genes to FGF signaling or inhibition of BMP indicate the absence of a conserved neural induction module. BMC Developmental Biology11(1), 74.

Rosenwald, A. G. (2011). Women on the Verge of a Glass-ceiling Breakdown.

Solaymani-Mohammadi, S., & Singer, S. M. (2011). Host immunity and pathogen strain contribute to intestinal disaccharidase impairment following gut infection. The Journal of Immunology187(7), 3769-3775.

Stanton, M. A., Gibson, Q. A., & Mann, J. (2011). When mum’s away: a study of mother and calf ego networks during separations in wild bottlenose dolphins (Tursiops sp.). Animal Behaviour82(2), 405-412.

Úbeda, F., Haig, D., & Patten, M. M. (2011). Stable linkage disequilibrium owing to sexual antagonism. Proceedings of the Royal Society B: Biological Sciences278(1707), 855-862.

Welch, D., Bansal, S., & Hunter, D. R. (2011). Statistical inference to advance network models in epidemiology. Epidemics3(1), 38-45.

Williams, C. W., & Elmendorf, H. G. (2011). Identification and analysis of the RNA degrading complexes and machinery of Giardia lamblia using an in silico approach. BMC Genomics12(1), 586.

Wimp, G. M., Murphy, S. M., Lewis, D., & Ries, L. (2011). Do edge responses cascade up or down a multi‐trophic food web?. Ecology Letters14(9), 863-870.


Publications in 2010

Adedoyin, M. O., Vicini, S., & Neale, J. H. (2010). Endogenous N-acetylaspartylglutamate (NAAG) inhibits synaptic plasticity/transmission in the amygdala in a mouse inflammatory pain model. Molecular Pain6(1), 60.

Elsik, C. G. (2010). The pea aphid genome sequence brings theories of insect defense into question. Genome Biology11(2), 1-3.

Frère, C. H., Krützen, M., Mann, J., Connor, R. C., Bejder, L., & Sherwin, W. B. (2010). Social and genetic interactions drive fitness variation in a free-living dolphin population. Proceedings of the National Academy of Sciences107(46), 19949-19954.

Frere, C. H., Krützen, M., Kopps, A. M., Ward, P., Mann, J., & Sherwin, W. B. (2010). Inbreeding tolerance and fitness costs in wild bottlenose dolphins. Proceedings of the Royal Society B: Biological Sciences277(1694), 2667-2673.

Frère, C. H., Krützen, M., Mann, J., Watson-Capps, J. J., Tsai, Y. J., Patterson, E. M., … & Sherwin, W. B. (2010). Home range overlap, matrilineal and biparental kinship drive female associations in bottlenose dolphins. Animal Behaviour80(3), 481-486.

Frère, C. H., Krzyszczyk, E., Patterson, E. M., Hunter, S., Ginsburg, A., & Mann, J. (2010). Thar she blows! A novel method for DNA collection from cetacean blow. PloS One5(8), e12299.

Kesleman, A., Singer, S.M. (2010) Immunity to Giardiasis. In: Brandonisio, O., Jirillo, E., Immune Response to Parasitic Infections: Protozoa. (1),  p. 78–97. Benthem, New York, New York.

North, H. A., Karim, A., Jacquin, M. F., & Donoghue, M. J. (2010). EphA4 is necessary for spatially selective peripheral somatosensory topography. Developmental Dynamics239(2), 630-638.

O’Donnell, D., & Armbruster, P. (2010). Inbreeding depression affects life-history traits but not infection by Plasmodium gallinaceum in the Asian tiger mosquito, Aedes albopictus. Infection, Genetics and Evolution10(5), 669-677.

Parvaresh, K. C., Huber, A. M., Brochin, R. L., Bacon, P. L., McCall, G. E., Huey, K. A., & Hyatt, J. P. K. (2010). Acute vascular endothelial growth factor expression during hypertrophy is muscle phenotype specific and localizes as a striated pattern within fibres. Experimental Physiology95(11), 1098-1106.

Sharara, H., Singh, L., Getoor, L., & Mann, J. (2011). Understanding actor loyalty to event-based groups in affiliation networks. Social Network Analysis and Mining1(2), 115-126.

Singh, L., Bienenstock, E. J., & Mann, J. (2010). Perspectives on social network analysis for observational scientific data. In Handbook of Social Network Technologies and Applications (pp. 147-168). Springer, Boston, MA.

Solaymani-Mohammadi, S., Genkinger, J. M., Loffredo, C. A., & Singer, S. M. (2010). A meta-analysis of the effectiveness of albendazole compared with metronidazole as treatments for infections with Giardia duodenalis. PLoS Negl Trop Dis4(5), e682.

Solaymani-Mohammadi, S., & Singer, S. M. (2010). Giardia duodenalis: the double-edged sword of immune responses in giardiasis. Experimental Parasitology126(3), 292-297.

Thévenon, A. D., Zhou, J. A., Megnekou, R., Ako, S., Leke, R. G., & Taylor, D. W. (2010). Elevated levels of soluble TNF receptors 1 and 2 correlate with Plasmodium falciparum parasitemia in pregnant women: potential markers for malaria-associated inflammation. The Journal of Immunology185(11), 7115-7122.

Urbanski, J. M., Benoit, J. B., Michaud, M. R., Denlinger, D. L., & Armbruster, P. (2010). The molecular physiology of increased egg desiccation resistance during diapause in the invasive mosquito, Aedes albopictus. Proceedings of the Royal Society B: Biological Sciences277(1694), 2683-2692.

Urbanski, J. M., Aruda, A., & Armbruster, P. (2010). A transcriptional element of the diapause program in the Asian tiger mosquito, Aedes albopictus, identified by suppressive subtractive hybridization. Journal of Insect Physiology56(9), 1147-1154.

Wimp, G. M., Murphy, S. M., Finke, D. L., Huberty, A. F., & Denno, R. F. (2010). Increased primary production shifts the structure and composition of a terrestrial arthropod community. Ecology91(11), 3303-3311.