College of Arts & Sciences
Department of Biology
Department of Biology

Graduate Publications from the Department of Biology

Research is a key focus of the faculty and curriculum in the Department of Biology. Across a variety of different labs, disciplines, and fields, our professors publish numerous journal articles each year, which can be found below. 

In Press

  • Minsavage-Davis, C.D.; Garthwaite, I.J.; Fisher, M.D.; Leigh, A.; Ramstack Hobbs, J.M.; Claeson, S.M.; Wimp, G.M.; LeRoy, C.J. 2023. Spatial Habitat Structure Assembles Willow-Dependent Communities across the Primary Successional Watersheds of Mount St. Helens, USA. Forests, 14, 322. https://doi.org/10.3390/f14020322
  • Rippel, T.M.*; Minsavage-Davis, C.D.*; Shirey, V.; Wimp, G.M. 2023. Simple machine learning with aerial imagery reveals severe loss of a salt marsh foundation species. Estuaries and Coasts, 46, 1110-1122. https://doi.org/10.1007/s12237-023-01192-z
  • LV Cosme, M Corley, T Johnson, D Severson, G Yan, X Wang, N Beebe, A Maynard, M Bonizzoni, SN Surendran, C-H Chen, K Maringer, I Wahid, S Mukherjee, J Xu, MC Fontaine, EL Estallo, M Stein, T Livdahl, PY Scaraffia, BCarter, M Mogi, N Tuno, JW Mains, K Medley, DE Bowles, RJ Gill, R Eritja, R González-Obando, S Boyer, A Abunyewa, K Hackett, T Wu, J Nguyen, J Shen, H Zhao, TT Huynh, JE Crawford, PA Armbruster, A Caccone. 2024. A genotyping array for the globally invasive vector mosquito, Aedes albopictus. Parasites and Vectors, in press.
  • M Heilig, PA Armbruster. 2024. Efficient RNAi knockdown at 20 °C in Aedes albopictus (Diptera: Culicidae). Journal of Medical Entomology, in press.
  • M Heilig, S Sturiale, S Marzec, CM Holzapfel, WE Bradshaw, M Meuti, PA Armbruster. 2024. Phenotypic variation in biting behavior associated with differences in expression of olfactory genes in the vector mosquito, Aedes albopictus (Diptera: Culicidae). Journal of Medical Entomology, in press.

Publication in 2024

  • Demby, T., Gross, P. S., Mandelblatt, J., Huang, J. K., & Rebeck, G. W. (2024). The chemotherapeutic agent doxorubicin induces brain senescence, with modulation by APOE genotype. Experimental neurology, 371, 114609. https://doi.org/10.1016/j.expneurol.2023.114609
  • Hu, J., Melchor, G. S., Ladakis, D., et al. (2024). Myeloid cell-associated aromatic amino acid metabolism facilitates CNS myelin regeneration. npj Regenerative Medicine, 9(1), 1. https://doi.org/10.1038/s41536-023-00345-9

Publications in 2023

  • DeSaix, M. G., Anderson, E. C., Bossu, C. M., Rayne, C. E., Schweizer, T. M., Bayly, N. J., P.P. Marra and Ruegg, K. C. 2023. Low‐coverage whole genome sequencing for highly accurate population assignment: Mapping migratory connectivity in the American Redstart (Setophaga ruticilla). Molecular Ecology.
  • Dossman, B.C., Studds, C.E., LaDeau, S.L., Sillett, T.S. and Marra, P.P., 2023. The role of tropical rainfall in driving range dynamics for a long-distance migratory bird. Proceedings of the National Academy of Sciences, 120(52), p.e2301055120
  • Nemes, C.E., Marra, P.P., Zenzal Jr, T.J., Collins, S.A., Dossman, B.C., Gerson, A.R., Gómez, C., González, A.M., Gutierrez Ramirez, M., Hamer, S.A. and Marty, J., 2023. Springing forward: Migrating songbirds catch up with the start of spring in North America. Journal of Animal Ecology.
  • Park, Z. M., Remillard, M., Belnap, E., & Rose, M. D. (2023). Kar4 is required for the normal pattern of meiotic gene expression. PLoS genetics, 19(8), e1010898. https://doi.org/10.1371/journal.pgen.1010898
  • Park, Z. M., Sporer, A. J., Kraft, K., Lum, K. K., Blackman, E., Belnap, E., Yellman, C. M., & Rose, M. D. (2023). Kar4, the yeast homolog of METTL14, is required for mRNA m6A methylation and meiosis. PLoS genetics, 19(8), e1010896. https://doi.org/10.1371/journal.pgen.1010896
  • Rose, K. P., Manilla, G., Milon, B., Zalzman, O., Song, Y., Coate, T. M., & Hertzano, R. (2023). Spatially distinct otic mesenchyme cells show molecular and functional heterogeneity patterns before hearing onset. iScience, 26(10), 107769. https://doi.org/10.1016/j.isci.2023.107769
  • Stevens, H. C., Emily J. Williams, Calandra Q. Stanley, Bryant C. Dossman, Ivy Ciaburri, Nathan W. Cooper, Luciana S. Bowden and P.P. Marra. 2023. Incorporating drivers of global change throughout the annual cycle in species distribution models for migratory birds: A gap in ecological forecasting. Frontiers in Bird Science: 1230978.

Publications in 2022

  • Martinez-Cervantes J., Shah P., Phan A., Cervantes-Sandoval I. 2022. High-order unimodal olfactory sensory preconditioning in Drosophila. elife, Sep 21;11:e79107.
  • Pendleton A, Yeo WS, Alqahtani S, DiMaggio DA Jr, Stone CJ, Li Z, Singh VK, Montgomery CP, Bae T, Brinsmade SR. Regulation of the Sae Two-Component System by Branched-Chain Fatty Acids in Staphylococcus aureus. mBio. 2022 Oct 26;13(5):e0147222.

Publications in 2021

  • Larsen, E. A. and Shirey, V.M. (2021) Method matters: pitfalls in analyzing phenology from occurrence records. Ecology Letters in press
  • Skeen, H.R., Cooper, N.W., Hackett, S.J., Bates, J.M., and Marra, P.P. (2021) Repeated sampling of individuals reveals impact of tropical and temperate habitats on microbiota of a migratory bird. Molecular Ecology in press
  • Bennett, R.E., Sillett, T.S., Rice, R.A., and Marra, P.P. (2021) Impact of cocoa agricultural intensification on bird diversity and community composition. Conservation Biology in press
  • Murphy, S.M., and Wimp, G.M. (2021) Editorial overview: Effects of global change on species interactions and biodiversity in natural and managed landscapes. Current Opinion in Insect Science 47:iii-vi.
  • Rippel, T.M., Tomasula, J., Murphy, S.M., and Wimp, G.M. (2021) Global change in marine coastal habitats impacts insect populations and communities. Current Opinion in Insect Science 47:1-6. doi: 10.1016/j.cois.2021.02.010.
  • Zylstra, E.R., Ries, L., Neupane, N., Saunders, S.P., Ramírez, M.I., Rendón-Salinas, E.,
  • Oberhauser, K.S., Farr, M.T., and Zipkin, E.F. (2021) Changes in climate drive recent monarch butterfly dynamics. Nature Ecology & Evolution 5(10):1441-1452.
  • McCann, M.S., Fernandez, H.R., Flowers, S.A., and Maguire-Zeiss, K.A. (2021) Polychlorinated biphenyls induce oxidative stress and metabolic responses in astrocytes. Neurotoxicology 86:59-68.
  • Strickland, K., Mann, J., Foroughirad, V., Levengood, A.L., and Frère, C.H. (2021) Maternal effects and fitness consequences of individual variation in bottlenose dolphins’ ecological niche. J Animal Ecology 90(8):1948-1960.
  • Kleinschmit, A.J., Ryder, E.F., Kerby, J.L., Murdoch, B., Donovan, S., Grandgenett, N.F.,
  • Cook, R.E., Siriwardana, C., Morgan, W., Pauley, M., Rosenwald, A., Triplett, E., Tapprich, W. (2021) Community development, implementation, and assessment of a NIBLSE bioinformatics sequence similarity learning resource. PLoS One 16(9):e0257404.
  • Somveille, M., Bay, R.A., Smith, T.B., Marra, P.P., and Ruegg, K.C. (2021) A general theory of avian migratory connectivity. Ecology Letters 24(9):1848-1858.
  • Buechley, E.R., Oppel, S., Efrat, R., Phipps, W.L., Carbonell Alanís, I., Álvarez, E., Andreotti, A., Arkumarev, V., Berger-Tal, O., Bermejo Bermejo, A., Bounas, A., Ceccolini, G., Cenerini, A., Dobrev, V., Duriez, O., García, J., García-Ripollés, C., Galán, M., Gil, A., Giraud, L., Hatzofe, O., Iglesias-Lebrija, J.J., Karyakin, I., Kobierzycki, E., Kret, E., Loercher, F., López-López, P., Miller, Y., Mueller, T., Nikolov, S.C., de la Puente, J., Sapir, N., Saravia, V., Şekercioğlu, Ç.H., Sillett, T.S., Tavares, J., Urios, V., and Marra, P.P. (2021) Differential survival throughout the full annual cycle of a migratory bird presents a life-history trade-off. J Animal Ecology 90(5):1228-1238.
  • DeBrock, S., Cohen, E., Balasubramanian, S., Marra, P.P., and Hamer, S.A. (2021) Characterization of the Plasmodium and Haemoproteus parasite community in temperate-tropical birds during spring migration. Int J Parasitology and Parasites in Wildlife 15:12-21.
  • Yamazaki, R., Osanai, Y., Kouki, T., Shinohara, Y., Huang, J.K., and Ohno, N. (2021) Macroscopic detection of demyelinated lesions in mouse PNS with neutral red dye. Science Reports 11(1):16906.
  • Evans, T., Krzyszczyk, E., Frère, C., and Mann, J. (2021) Lifetime stability of social traits in bottlenose dolphins. Communications Biology 4(1):759.
  • Rushing, C.S., Brandt Ryder, T., Valente, J.J., Scott Sillett, T., and Marra, P.P. (2021) Empirical tests of habitat selection theory reveal that conspecific density and patch quality, but not habitat amount, drive long-distance immigration in a wild bird. Ecological Letters 24(6):1167-1177.
  • Stanley, C.Q., Dudash, M.R., Ryder, T.B., Gregory Shriver, W., and Marra, P.P. (2021) Variable tropical moisture and food availability underlie mixed winter space-use strategies in a migratory songbird. Proc Biological Sciences 288(1955):20211220.
  • Colman, E., Colizza, V., Hanks, E.M., Hughes, D.P., and Bansal, S. (2021) Social fluidity mobilizes contagion in human and animal populations. Elife 10:e62177.
  • Akresh, M.E., King, D.I., and Marra, P.P. (2021) Hatching date influences winter habitat occupancy: Examining seasonal interactions across the full annual cycle in a migratory songbird. Ecological Evollution 11(14):9241-9253.
  • Valdano, E., Lee, J., Bansal, S., Rubrichi, S., and Colizza, V. (2021) Highlighting socio-economic constraints on mobility reductions during COVID-19 restrictions in France can inform effective and equitable pandemic response. J Travel Med. 28(4):taab045.
  • Smith, H.H., Hyde, A.S., Simkus, D.N., Libby, E., Maurer, S.E., Graham, H.V., Kempes, C.P., Sherwood Lollar, B., Chou, L., Ellington, A.D., Fricke, G.M., Girguis, P.R., Grefenstette, N.M., Pozarycki, C.I., House, C.H., and Johnson, S.S. (2021) The Grayness of the Origin of Life. Life (Basel) 11(6):498.
  • Hallworth, M.T., Bayne, E., McKinnon, E., Love, O., Tremblay, J.A., Drolet, B., Ibarzabal, J., Van Wilgenburg, S., and Marra, P.P. (2021) Habitat loss on the breeding grounds is a major contributor to population declines in a long-distance migratory songbird. Proc Biological Sciences 288(1949):20203164.
  • Zipfel, C.M., Colizza, V., and Bansal, S. (2021) The missing season: The impacts of the COVID-19 pandemic on influenza. Vaccine 39(28):3645-3648.
  • Mushegian, A.A., Neupane, N., Batz, Z., Mogi, M., Tuno, N., Toma, T., Miyagi, I., Ries, L., and Armbruster, P.A. (2021) Ecological mechanism of climate-mediated selection in a rapidly evolving invasive species. Ecological Letters 24(4):698-707.
  • Zipfel, C.M., Colizza, V., and Bansal, S. (2021) Health inequities in influenza transmission and surveillance. PLoS Computational Biology 17(3):e1008642.
  • He, H.Y., Lin, C.Y., and Cline, H.T. (2021) In Vivo Time-Lapse Imaging and Analysis of Dendritic Structural Plasticity in Xenopus laevis Tadpoles. Cold Spring Harbors
  • Protocols 10.1101/pdb.prot106781.
  • Roselli, C., Ramaswami, M., Boto, T., and Cervantes-Sandoval, I. (2021) The Making of Long-Lasting Memories: A Fruit Fly Perspective. Frontiers in Behavioral Neuroscience 15:662129.
  • McCann, M.S., and Maguire-Zeiss, K.A. (2021) Environmental toxicants in the brain: A review of astrocytic metabolic dysfunction. Environ Toxicol Pharmacol 84:103608.
  • Boyle, J.H., Rastas, P.M.A., Huang, X., Garner, A.G., Vythilingam, I., and Armbruster, P.A. (2021) A Linkage-Based Genome Assembly for the Mosquito Aedes albopictus and Identification of Chromosomal Regions Affecting Diapause. Insects 12(2):167.
  • Yamazaki, R., Ohno, N., and Huang, J.K. (2021) Acute motor deficit and subsequent remyelination-associated recovery following internal capsule demyelination in mice. J Neurochemistry 156(6):917-928.
  • Simon, S.J., Keefover-Ring, K., Park, Y.L., Wimp, G., Grady, J., and DiFazio, S.P. (2021) Characterization of Salix nigra floral insect community and activity of three native Andrena bees. Ecology & Evolution 11(9):4688-4700.
  • Zipfel, C., Colizza, V., and Bansal, S. (2021) Double trouble? When a pandemic and seasonal virus collide. medRxiv [Preprint]. 2020.03.30.20047993.
  • Albery, G.F., Kirkpatrick, L., Firth, J.A., and Bansal, S. (2021) Unifying spatial and social network analysis in disease ecology. J Animal Ecology 90(1):45-61.
  • Garnier, R., Benetka, J.R., Kraemer, J., and Bansal S. (2021) Socioeconomic Disparities in Social Distancing During the COVID-19 Pandemic in the United States: Observational Study. J Med Internet Res. 23(1):e24591.
  • Babola, T.A., Li, S., Wang, Z., Kersbergen, C.J., Elgoyhen, A.B., Coate, T.M., and Bergles DE (2021) Purinergic Signaling Controls Spontaneous Activity in the Auditory System throughout Early Development. J Neuroscience 41(4):594-612.
  • Williams, A.J., Craft, K.L., Millan, M., Johnson, S.S., Knudson, C.A., Juarez Rivera, M., McAdam, A.C., Tobler, D., and Skok, J.R. (2021) Fatty Acid Preservation in Modern and Relict Hot-Spring Deposits in Iceland, with Implications for Organics Detection on Mars. Astrobiology 21(1):60-82.

Publications in 2020

  • Batz, Z. A., Clemento, A. J., Fitzenwanker, J., Ring, T. J., Garza, J. C., & Armbruster, P. A. (2020). Rapid adaptive evolution of the diapause program during range expansion of an invasive mosquito. Evolution 74(7):1451-1465
  • Baydyuk, M., Morrison, V. E., Gross, P. S., & Huang, J. K. (2020). Extrinsic Factors Driving Oligodendrocyte Lineage Cell Progression in CNS Development and Injury. Neurochemical Research, 1-13.
  • Belitz, M. W., Larsen, E. A., Ries, L., & Guralnick, R. P. (2020). The accuracy of phenology estimators for use with sparsely sampled presence‐only observations. Methods in Ecology and Evolution.
  • Bried, J., Ries, L., Smith, B., Patten, M., Abbott, J., Ball-Damerow, J., … & Dijkstra, K. D. (2020). Towards Global Volunteer Monitoring of Odonate Abundance. BioScience.
  • Brooks, P. M., Rose, K. P., MacRae, M. L., Rangoussis, K. M., Gurjar, M., Hertzano, R., & Coate, T. M. (2020). Pou3f4‐expressing otic mesenchyme cells promote spiral ganglion neuron survival in the postnatal mouse cochlea. Journal of Comparative Neurology.
  • Campbell, D. L., Thessen, A. E., & Ries, L. (2020). A novel curation system to facilitate data integration across regional citizen science survey programs. PeerJ, 8, e9219.
  • Cervantes-Sandoval, I., Davis, R. L., & Berry, J. A. (2020). Rac1 Impairs Forgetting-Induced Cellular Plasticity in Mushroom Body Output Neurons. Frontiers in Cellular Neuroscience, 14, 258.
  • Collins, M. M., Behera, R. K., Pallister, K. B., Evans, T. J., Burroughs, O., Flack, C., … & Nygaard, T. K. (2020). The Accessory Gene saeP of the SaeR/S Two-Component Gene Regulatory System Impacts Staphylococcus aureus Virulence During Neutrophil Interaction. Frontiers in Microbiology, 11, 561.
  • Fink, M. Y., D. Shapiro and S. M. Singer(2020). Giardia lamblia: Laboratory Maintenance, Lifecycle Induction, and Infection of Murine Models. Curr Protoc Microbiol. 57:e102. (Fink was a PhD student and Shapiro was an undergrad, class of 2020).
  • Galezo, A. A., Foroughirad, V., Krzyszczyk, E., Frère, C. H., & Mann, J. (2020). Juvenile social dynamics reflect adult reproductive strategies in bottlenose dolphins. Behavioral Ecology.
  • Hopper, L. M., & Ross, S. R. (Eds.). (2020). Chimpanzees in Context: A Comparative Perspective on Chimpanzee Behavior, Cognition, Conservation, and Welfare. University of Chicago Press.
  • Jin, J., He, X., & Silva, E. (2020). Stable intronic sequence RNAs (sisRNAs) are selected regions in introns with distinct properties. BMC Genomics, 21, 1-16.
  • King, A. N., de Mets, F., & Brinsmade, S. R. (2020). Who’s in control? Regulation of metabolism and pathogenesis in space and time. Current Opinion in Microbiology.
  • Leu, S. T., Sah, P., Krzyszczyk, E., Jacoby, A. M., Mann, J., & Bansal, S. (2020). Sex, synchrony, and skin contact: integrating multiple behaviors to assess pathogen transmission risk. Behavioral Ecology.
  • Mainali, K., Hefley, T., Ries, L., & Fagan, W. (2020). Matching expert range maps with species distribution model predictions. Conservation Biology.
  • Mlynek, K. D., Bulock, L. L., Stone, C. J., Curran, L. J., Sadykov, M. R., Bayles, K. W., & Brinsmade, S. R. (2020). Genetic and Biochemical Analysis of CodY-Mediated Cell Aggregation in Staphylococcus aureus Reveals an Interaction between Extracellular DNA and Polysaccharide in the Extracellular Matrix. Journal of Bacteriology, 202(8).
  • Mogi, M., Armbruster, P. A., & Tuno, N. (2020). Differences in Responses to Urbanization Between Invasive Mosquitoes, Aedes japonicus japonicu s (Diptera: Culicidae) and Aedes albopictus, in Their Native Range, Japan. Journal of Medical Entomology, 57(1), 104-112.
  • Morrison, V. E., Smith, V. N., & Huang, J. K. (2020). Retinoic acid is required for oligodendrocyte precursor cell production and differentiation in the postnatal mouse corpus callosum. Eneuro, 7(1).
  • Morrissette, V. A., & Rolfes, R. J. (2020). The intersection between stress responses and inositol pyrophosphates in Saccharomyces cerevisiae. Current Genetics, 1-10.
  • Murphy, S. M., Lewis, D., & Wimp, G. M. (2020). Predator population size structure alters consumption of prey from epigeic and grazing food webs. Oecologia, 192(3), 791-799.
  • Powell, S. N., Wallen, M. M., Miketa, M. L., Krzyszczyk, E., Foroughirad, V., Bansal, S., & Mann, J. (2020). Sociality and tattoo skin disease among bottlenose dolphins in Shark Bay, Australia. Behavioral Ecology, 31(2), 459-466.
  • Rippel, T. M., Mooring, E. Q., Tomasula, J., & Wimp, G. M. (2020). Habitat edge effects decrease litter accumulation and increase litter decomposition in coastal salt marshes. Landscape Ecology, 35(10), 2179-2190.
  • Ryder, E. F., Morgan, W. R., Sierk, M., Donovan, S. S., Robertson, S. D., Orndorf, H. C., Rosenwald, A.G., … & Tapprich, W. E. (2020). Incubators: Building community networks and developing open educational resources to integrate bioinformatics into life science education. Biochemistry and Molecular Biology Education, 48(4), 381-390.
  • Singer, S. M, V. V. Angelova, H. DeLeon and E. Miskovsky (2020) What’s eating you?- Recent updates on Giardia, the microbiome and the immune response. Curr Opin Microbiol. 58: 87-92 (Angelova and deLeon are PhD students, Miskovsky is an undergrad, class of 2022).
  • Singleton, K. S., Silva-Rodriguez, P., & Silva, E. M. (2020). Pairing your Sox: identification of Sox11 partner proteins and interaction domains in the developing neural plate. bioRxiv.
  • Steidle, E. A., Morrissette, V. A., Fujimaki, K., Chong, L., Resnick, A. C., Capaldi, A. P., & Rolfes, R. J. (2020). The InsP7 phosphatase Siw14 regulates inositol pyrophosphate levels to control localization of the general stress response transcription factor Msn2. Journal of Biological Chemistry, 295(7), 2043-2056.
  • Wang, Z., Jung, J. S., Inbar, T. C., Rangoussis, K. M., Faaborg-Andersen, C., & Coate, T. M. (2020). The Purinergic Receptor P2rx3 is Required for Spiral Ganglion Neuron Branch Refinement during Development. Eneuro, 7(4).
  • Yamazaki, R., Ohno, N., & Huang, J. K. (2020). Acute motor deficit and subsequent remyelination‐associated recovery following internal capsule demyelination in mice. Journal of Neurochemistry.

Publication in 2019

  • Abarca, M., Larsen, E. A., & Ries, L. (2019). Heatwaves and novel host consumption increase overwinter mortality of an imperiled wetland butterfly. Frontiers in Ecology and Evolution, 7, 193.
  • Abarca, M. (2019). Herbivore seasonality responds to conflicting cues: Untangling the effects of host, temperature, and photoperiod. PloS One, 14(9), e0222227.
  • Abdala‐Roberts, L., Puentes, A., Finke, D. L., Marquis, R. J., Montserrat, M., Poelman, E. H., … & Mooney, K. (2019). Tri‐trophic interactions: bridging species, communities and ecosystems. Ecology Letters, 22(12), 2151-2167.
  • Armbruster, P. A. (2019). Tiger mosquitoes tackled in a trial. Nature.com 
  • Modlmeier, A. P., Colman, E., Hanks, E. M., Bringenberg, R., Bansal, S., & Hughes, D. P. (2019). Ant colonies maintain social homeostasis in the face of decreased density. eLife, 8, e38473.
  • Augagneur, Y., King, A. N., Germain‐Amiot, N., Sassi, M., Fitzgerald, J. W., Sahukhal, G. S., … & Brinsmade, S. R. (2020). Analysis of the CodY RNome reveals RsaD as a stress‐responsive riboregulator of overflow metabolism in Staphylococcus aureus. Molecular Microbiology, 113(2), 309-325.
  • Batz, Z. A., Brent, C. S., Marias, M. R., Sugijanto, J., & Armbruster, P. A. (2019). Juvenile Hormone III but not 20-hydroxyecdysone Regulates the Embryonic Diapause of Aedes albopictus. Frontiers in Physiology, 10, 1352.
  • Behera, R. K., Mlynek, K. D., Linz, M. S., & Brinsmade, S. R. (2019). A fluorescence-based method to study bacterial gene regulation in infected tissues. JoVE (Journal of Visualized Experiments), (144), e59055.
  • Carlson, C. J., Zipfel, C. M., Garnier, R., & Bansal, S. (2019). Global estimates of mammalian viral diversity accounting for host sharing. Nature Ecology & Evolution, 3(7), 1070-1075.
  • Fink, M. Y., Maloney, J., Keselman, A., Li, E., Menegas, S., Staniorski, C., & Singer, S. M. (2019). Proliferation of Resident Macrophages Is Dispensable for Protection during Giardia duodenalis Infections. ImmunoHorizons, 3(8), 412-421.
  • Foroughirad, V., Levengood, A. L., Mann, J., & Frère, C. H. (2019). Quality and quantity of genetic relatedness data affect the analysis of social structure. Molecular Ecology Resources, 19(5), 1181-1194.
  • He, H. Y., & Cline, H. T. (2019). What is excitation/inhibition and how is it regulated? A case of the elephant and the wisemen. Journal of Experimental Neuroscience, 13, 1179069519859371.
  • Lee, H. H., Wallen, M. M., Krzyszczyk, E., & Mann, J. (2019). Every scar has a story: age and sex-specific conflict rates in wild bottlenose dolphins. Behavioral Ecology and Sociobiology, 73(5), 63.
  • Manlik, O., Krützen, M., Kopps, A. M., Mann, J., Bejder, L., Allen, S. J., … & Sherwin, W. B. (2019). Is MHC diversity a better marker for conservation than neutral genetic diversity? A case study of two contrasting dolphin populations. Ecology and Evolution, 9(12), 6986-6998.
  • Michalski, J. R., Glotch, T. D., Rogers, A. D., Niles, P. B., Cuadros, J., Ashley, J. W., & Johnson, S. S. (2019). The geology and astrobiology of McLaughlin crater, Mars: An ancient lacustrine basin containing turbidites, mudstones, and serpentinites. Journal of Geophysical Research: Planets, 124(4), 910-940.
  • Nelson, T. M., Wallen, M. M., Bunce, M., Oskam, C. L., Lima, N., Clayton, L., & Mann, J. (2019). Detecting respiratory bacterial communities of wild dolphins: implications for animal health. Marine Ecology Progress Series, 622, 203-217.
  • Patten, M. M. (2019). The X chromosome favors males under sexually antagonistic selection. Evolution, 73(1), 84-91.
  • Ragland, G. J., Armbruster, P. A., & Meuti, M. E. (2019). Evolutionary and functional genetics of insect diapause: a call for greater integration. Current Opinion in Insect Science, 36, 74-81.
  • Ries, L., Zipkin, E. F., & Guralnick, R. P. (2019). Tracking trends in monarch abundance over the 20th century is currently impossible using museum records. Proceedings of the National Academy of Sciences, 116(28), 13745-13748.
  • Saunders, S. P., Ries, L., Neupane, N., Ramírez, M. I., García-Serrano, E., Rendón-Salinas, E., & Zipkin, E. F. (2019). Multiscale seasonal factors drive the size of winter monarch colonies. Proceedings of the National Academy of Sciences, 116(17), 8609-8614.
  • Singer, S. M., Fink, M. Y., & Angelova, V. V. (2019). Recent insights into innate and adaptive immune responses to Giardia. In Advances in Parasitology (Vol. 106, pp. 171-208). Academic Press.
  • Solaymani-Mohammadi, S., L. Eckmann and S. M. Singer. (2019) Interleukin (IL)-21 in Inflammation and Immunity During Parasitic Diseases. Front Cell and Infect Micro. 9: 401.
  • T. C. Figueiredo, P. A. Teixeira, M. Fantinatti, M. L. Silva-Freitas, J. R. Santos-Oliveira, C. H. Coelho, S. M. Singer, and A. M. Da-Cruz (2019) Giardiasis alters intestinal fatty acid binding protein (I-FABP) and plasma cytokines levels in children in Brazil. Pathogens. 9:7-16.
  • Teramoto, T., Huang, X., Armbruster, P. A., & Padmanabhan, R. (2019). Infection of Aedes albopictus mosquito C6/36 cells with the wMelpop strain of Wolbachia modulates dengue virus-induced host cellular transcripts and induces critical sequence alterations in the dengue viral genome. Journal of Virology, 93(15), e00581-19.
  • van Aswegen, M., Christiansen, F., Symons, J., Mann, J., Nicholson, K., Sprogis, K., & Bejder, L. (2019). Morphological differences between coastal bottlenose dolphin (Tursiops aduncus) populations identified using non-invasive stereo-laser photogrammetry. Scientific Reports, 9(1), 1-14.
  • Wepprich, T., Adrion, J. R., Ries, L., Wiedmann, J., & Haddad, N. M. (2019). Butterfly abundance declines over 20 years of systematic monitoring in Ohio, USA. PLoS One, 14(7), e0216270.
  • Wimp, G. M., Lewis, D., & Murphy, S. (2019). Impacts of nutrient subsidies on salt marsh food webs: a latitudinal survey. Frontiers in Ecology and Evolution, 7, 350.
  • Wimp, G. M., Ries, L., Lewis, D., & Murphy, S. M. (2019). Habitat edge responses of generalist predators are predicted by prey and structural resources. Ecology, 100(6), e02662.
  • Wimp, G. M., Tomasula, J., & Hamilton, M. B. (2019). Putting the genes into community genetics. Molecular Ecology, 28(19), 4351-4353.
  • Publications in 2018
  • Armbruster P.A. Molecular pathways to nonbiting mosquitoes. Proceedings of the National
  •       Academy of Sciences. 2018;115(5):836–838.
  • Coelho, C. H. and S. M. Singer. (2018) Recent advances in the Giardia-host relationship reveal danger lurking behind the smile. PLoS Negl Trop Dis. 12:e0006625.Nooshadokht, M., Kalantari-Khandani, B., Sharif, I., Kamyabi, H., Kagnoff, M. F., Eckmann, L., Singer, S. M., Babaei, Z.
  • Johnson S.S., Anslyn E.V., Graham H.V., Mahaffy P.R., Ellington A.D. Fingerprinting Non-Terran
  •      Life. Astrobiology. 2018 Aug.
  • Kaiser J.C., King A.N., Grigg J.C., Sheldon J.R., Edgell D.R., Murphy M.E.P., Brinsmade S.R.,
  •      Heinrichs D.E. Repression of branched-chain amino acid synthesis in Staphylococcus aureus is
  •      mediated by isoleucine via CodY, and by a leucine-rich attenuator peptide. PLOS Genetics.
  •      2018;14(1).
  • Lee E.C., Arab A., Goldlust S.M., Viboud C., Grenfell B.T., Bansal S. Deploying digital health
  •       data to optimize influenza surveillance at national and local scales. PLOS Computational
  •       Biology. 2018;14(3).
  • Miketa M., Patterson E., Krzyszczyk E., Foroughirad V., Mann J. Calf age and sex affect maternal
  •       diving behaviour in Shark Bay bottlenose dolphins. Animal Behaviour. 2018;137:107–117.
  • Mlynek K.D., Sause W.E., Moormeier D.E., Sadykov M.R., Hill K.R., Torres V.J., Bayles K.W.,
  •       Brinsmade S.R. Nutritional Regulation of the Sae Two-Component System by CodY in
  •       Staphylococcus aureus. Journal of Bacteriology. 2018;200(8).
  • Patten M.M. Selfish X chromosomes and speciation. Molecular Ecology. 2018.
  • Powell S.N., Wallen M.M., Bansal S., Mann J. Epidemiological investigation of tattoo-like skin
  •       lesions among bottlenose dolphins in Shark Bay, Australia. Science of The Total
  •       Environment. 2018;630:774–780.
  • Powell S.N., Wallen M.M., Bansal S., Mann J. Epidemiological investigation of tattoo-like skin
  •      lesions among bottlenose dolphins in Shark Bay, Australia. Science of The Total Environment.
  •      2018;630:774–780.
  • Sah P, Mann J, Bansal S. 2018. Disease implications of animal social network structure: a
  •      synthesis across social systems. Journal of Animal Ecology 87.
  • Saunders S.P., Ries L, Oberhauser K.S., Thogmartin W.E., Zipkin E.F. Local and cross-seasonal
  •     associations of climate and land use with abundance of monarch butterflies Danaus
  •     plexippus. Ecography. 2018;41(2):278–290.
  • Semmens D.J., Diffendorfer J.E., Bagstad K.J., Wiederholt R., Oberhauser K., Ries L.,
  •      Semmens B.X., Goldstein J., Loomis J., Thogmartin W.E., et al. Quantifying ecosystem
  •      service flows at multiple scales across the range of a long-distance migratory species.
  •      Ecosystem Services. 2018.
  • Zaikova E., Benison K.C., Mormile M.R., Johnson S.S. Microbial communities and their predicted metabolic functions in a desiccating acid salt lake. Extremophiles. 2018;22(3):367–379.

Publications in 2017

  • Barash, N. R., Maloney, J. G., Singer, S. M., & Dawson, S. C. (2017). Giardia alters commensal microbial diversity throughout the murine gut. Infection and Immunity, 85(6).
  • Bartelt, L. A., Bolick, D. T., Mayneris-Perxachs, J., Kolling, G. L., Medlock, G. L., Zaenker, E. I., … & Singer, S. M. (2017). Cross-modulation of pathogen-specific pathways enhances malnutrition during enteric co-infection with Giardia lamblia and enteroaggregative Escherichia coli. PLoS Pathogens, 13(7), e1006471.
  • Batz, Z. A., Goff, A. C., & Armbruster, P. A. (2017). MicroRNAs are differentially abundant during Aedes albopictus diapause maintenance but not diapause induction. Insect Molecular Biology, 26(6), 721-733.
  • Brinsmade, S. R. (2017). CodY, a master integrator of metabolism and virulence in Gram-positive bacteria. Current Genetics, 63(3), 417-425.
  • Chamberlain, K. A., Chapey, K. S., Nanescu, S. E., & Huang, J. K. (2017). Creatine enhances mitochondrial-mediated oligodendrocyte survival after demyelinating injury. Journal of Neuroscience, 37(6), 1479-1492.
  • Coelho, C. H., Durigan, M., Leal, D. A. G., de Bernardi Schneider, A., Franco, R. M. B., & Singer, S. M. (2017). Giardiasis as a neglected disease in Brazil: Systematic review of 20 years of publications. PLoS Neglected Tropical Diseases, 11(10), e0006005.
  • Conant, K., Daniele, S., Bozzelli, P. L., Abdi, T., Edwards, A., Szklarczyk, A., … & Maguire-Zeiss, K. (2017). Matrix metalloproteinase activity stimulates N-cadherin shedding and the soluble N-cadherin ectodomain promotes classical microglial activation. Journal of Neuroinflammation, 14(1), 56.
  • Fischer, D. G., Wimp, G. M., Hersch‐Green, E., Bangert, R. K., LeRoy, C. J., Bailey, J. K., … & Whitham, T. G. (2017). Tree genetics strongly affect forest productivity, but intraspecific diversity–productivity relationships do not. Functional Ecology, 31(2), 520-529.
  • Franz, H. B., McAdam, A. C., Ming, D. W., Freissinet, C., Mahaffy, P. R., Eldridge, D. L., … & McLennan, S. M. (2017). Large sulfur isotope fractionations in Martian sediments at Gale Crater. Nature Geoscience, 10(9), 658-662.
  • Galezo, A. A., Krzyszczyk, E., & Mann, J. (2018). Sexual segregation in Indo-Pacific bottlenose dolphins is driven by female avoidance of males. Behavioral Ecology, 29(2), 377-386.
  • Huestis, D. L., Artis, M. L., Armbruster, P. A., & Lehmann, T. (2017). Photoperiodic responses of Sahelian malaria mosquitoes Anopheles coluzzii and An. arabiensis. Parasites & Vectors, 10(1), 621.
  • Jarvis, K. J., Allan, G. J., Craig, A. J., Beresic‐Perrins, R. K., Wimp, G., Gehring, C. A., & Whitham, T. G. (2017). Arthropod communities on hybrid and parental cottonwoods are phylogenetically structured by tree type: Implications for conservation of biodiversity in plant hybrid zones. Ecology and Evolution, 7(15), 5909-5921.
  • Johnson, S. S., Zaikova, E., Goerlitz, D. S., Bai, Y., & Tighe, S. W. (2017). Real-time DNA sequencing in the Antarctic dry valleys using the Oxford Nanopore sequencer. Journal of Biomolecular Techniques: JBT, 28(1), 2.
  • Kotsakiozi, P., Richardson, J. B., Pichler, V., Favia, G., Martins, A. J., Urbanelli, S., … & Caccone, A. (2017). Population genomics of the Asian tiger mosquito, Aedes albopictus: insights into the recent worldwide invasion. Ecology and Evolution, 7(23), 10143-10157.
  • Krzyszczyk, E., Patterson, E. M., Stanton, M. A., & Mann, J. (2017). The transition to independence: sex differences in social and behavioural development of wild bottlenose dolphins. Animal Behaviour, 129, 43-59.
  • Mann, J., & Karniski, C. (2017). Diving beneath the surface: long-term studies of dolphins and whales. Journal of Mammalogy, 98(3), 621-630.
  • Meineke, E. K., Holmquist, A. J., Wimp, G. M., & Frank, S. D. (2017). Changes in spider community composition are associated with urban temperature, not herbivore abundance. Journal of Urban Ecology, 3(1), juw010.
  • Michalski, J. R., Onstott, T. C., Mojzsis, S. J., Mustard, J., Chan, Q. H., Niles, P. B., & Johnson, S. S. (2018). The Martian subsurface as a potential window into the origin of life. Nature Geoscience, 11(1), 21-26.
  • Miketa, M. L., Krzyszczyk, E., & Mann, J. (2017). Behavioral responses to fishing line entanglement of a juvenile bottlenose dolphin in Shark Bay, Australia. Matters, 3(12), e201711000011.
  • Mogi, M., Armbruster, P. A., Tuno, N., Aranda, C., & Yong, H. S. (2017). The climate range expansion of Aedes albopictus (Diptera: Culicidae) in Asia inferred from the distribution of Albopictus subgroup species of Aedes (Stegomyia). Journal of Medical Entomology, 54(6), 1615-1625.
  • Munro, D. A., Hohenstein, P., Coate, T. M., & Davies, J. A. (2017). Refuting the hypothesis that semaphorin‐3f/neuropilin‐2 exclude blood vessels from the cap mesenchyme in the developing kidney. Developmental Dynamics, 246(12), 1047-1056.
  • Nooshadokht, M., Kalantari-Khandani, B., Sharifi, I., Kamyabi, H., Liyanage, N. P., Lagenaur, L. A., … & Solaymani-Mohammadi, S. (2017). Stool antigen immunodetection for diagnosis of Giardia duodenalis infection in human subjects with HIV and cancer. Journal of Microbiological Methods, 141, 35-41.
  • Oberhauser, K., Wiederholt, R., Diffendorfer, J. E., Semmens, D., Ries, L., Thogmartin, W. E., … & Semmens, B. (2017). A trans‐national monarch butterfly population model and implications for regional conservation priorities. Ecological Entomology, 42(1), 51-60.
  • Ries, L., Murphy, S. M., Wimp, G. M., & Fletcher, R. J. (2017). Closing persistent gaps in knowledge about edge ecology. Current Landscape Ecology Reports, 2(1), 30-41.
  • Rosenwald, L. C., Lill, J. T., Lind, E. M., & Weiss, M. R. (2017). Dynamics of host plant selection and host-switching by silver-spotted skipper caterpillars. Arthropod-Plant Interactions, 11(6), 833-842.
  • Sah, P., Leu, S. T., Cross, P. C., Hudson, P. J., & Bansal, S. (2017). Unraveling the disease consequences and mechanisms of modular structure in animal social networks. Proceedings of the National Academy of Sciences, 114(16), 4165-4170.
  • Salehi, P., Ge, M. X., Gundimeda, U., Michelle Baum, L., Lael Cantu, H., Lavinsky, J., … & Nikolakopoulou, A. M. (2017). Role of Neuropilin-1/Semaphorin-3A signaling in the functional and morphological integrity of the cochlea. PLoS Genetics, 13(10), e1007048.
  • Samuels, D. J., Wang, Z., Rhee, K. Y., & Brinsmade, S. R. (2017). A Tandem Liquid Chromatography–Mass Spectrometry-based Approach for Metabolite Analysis of Staphylococcus aureus. JoVE (Journal of Visualized Experiments), (121), e55558.
  • Solaymani-Mohammadi, S. (2017) Giardia duodenalis infection among human subjects with HIV/AIDS and cancer: significance of a stool antigen immunodetection-based modality for diagnosis. J. Microbio. Methods. 141: 35-41.
  • Strickland, K., Levengood, A., Foroughirad, V., Mann, J., Krzyszczyk, E., & Frère, C. H. (2017). A framework for the identification of long-term social avoidance in longitudinal datasets. Royal Society Open Science, 4(8), 170641.
  • Tighe, S., Afshinnekoo, E., Rock, T. M., McGrath, K., Alexander, N., McIntyre, A., … & Johnson, S. S. (2017). Genomic methods and microbiological technologies for profiling novel and extreme environments for the Extreme Microbiome Project (XMP). Journal of Biomolecular Techniques: JBT, 28(1), 31.
  • Wallen, M. M., Krzyszczyk, E., & Mann, J. (2017). Mating in a bisexually philopatric society: bottlenose dolphin females associate with adult males but not adult sons during estrous. Behavioral Ecology and Sociobiology, 71(10), 153.
  • Zhang, K. D., & Coate, T. M. (2017, May). Recent advances in the development and function of type II spiral ganglion neurons in the mammalian inner ear. In Seminars in Cell & Developmental Biology (Vol. 65, pp. 80-87). Academic Press.

Publications in 2016

  • Allen, M., Ghosh, S., Ahern, G. P., Villapol, S., Maguire-Zeiss, K. A., & Conant, K. (2016). Protease induced plasticity: matrix metalloproteinase-1 promotes neurostructural changes through activation of protease activated receptor 1. Scientific Reports, 6, 35497.
  • Babaei, Z., Malihi, N., Zia-Ali, N., Sharifi, I., Mohammadi, M. A., Kagnoff, M. F., … & Solaymani-Mohammadi, S. (2016). Adaptive immune response in symptomatic and asymptomatic enteric protozoal infection: evidence for a determining role of parasite genetic heterogeneity in host immunity to human giardiasis. Microbes and Infection, 18(11), 687-695.
  • Coelho, C. H., Costa, A. O., Silva, A. C. C., Pucci, M. M., Serufo, A. V., Busatti, H. G. N. O., … & Gomes, M. A. (2016). Genotyping and descriptive proteomics of a potential zoonotic canine strain of Giardia duodenalis, infective to mice. PloS One, 11(10), e0164946.
  • Ilyasov, A. A., Milligan, C. E., Pharr, E. P., & Howlett, A. C. (2018). The endocannabinoid system and oligodendrocytes in health and disease. Frontiers in Neuroscience, 12, 733.
  • Keselman, A., Li, E., Maloney, J., & Singer, S. M. (2016). The microbiota contributes to CD8+ T cell activation and nutrient malabsorption following intestinal infection with Giardia duodenalis. Infection and Immunity, 84(10), 2853-2860.
  • Li, E., Tako, E. A., & Singer, S. M. (2016). Complement activation by Giardia duodenalis parasites through the lectin pathway contributes to mast cell responses and parasite control. Infection and Immunity, 84(4), 1092-1099.
  • Manlik, O., McDonald, J. A., Mann, J., Raudino, H. C., Bejder, L., Krützen, M., … & Sherwin, W. B. (2016). The relative importance of reproduction and survival for the conservation of two dolphin populations. Ecology and Evolution, 6(11), 3496-3512.
  • Mann, J., & Karniski, C. (2017). Diving beneath the surface: long-term studies of dolphins and whales. Journal of Mammalogy, 98(3), 621-630.
  • Murphy, S. M., Battocletti, A. H., Tinghitella, R. M., Wimp, G. M., & Ries, L. (2016). Complex community and evolutionary responses to habitat fragmentation and habitat edges: what can we learn from insect science?. Current Opinion in Insect Science, 14, 61-65.
  • Patten, M. M. (2016). Epigenetics: Imprinting evolution in Arabidopsis. Nature Plants, 2(10), 1-2.
  • Patten, M. M., Cowley, M., Oakey, R. J., & Feil, R. (2016). Regulatory links between imprinted genes: evolutionary predictions and consequences. Proceedings of the Royal Society B: Biological Sciences, 283(1824), 20152760.
  • Psachoulia, K., Chamberlain, K. A., Heo, D., Davis, S. E., Paskus, J. D., Nanescu, S. E., … & Huang, J. K. (2016). IL4I1 augments CNS remyelination and axonal protection by modulating T cell driven inflammation. Brain, 139(12), 3121-3136.
  • Quach, J., Chadee, K., Mead, J. R., & Singer, S. M. (2016). Immunity to Intestinal Protozoa: Entamoeba, Cryptosporidium, and Giardia.
  • Rankin, R. W., Mann, J., Singh, L., Patterson, E. M., Krzyszczyk, E., & Bejder, L. (2016). The role of weighted and topological network information to understand animal social networks: a null model approach. Animal Behaviour, 113, 215-228.
  • Rydzewski, W. T., Carioscia, S. A., Liévano, G., Lynch, V. D., & Patten, M. M. (2016). Sexual antagonism and meiotic drive cause stable linkage disequilibrium and favour reduced recombination on the X chromosome. Journal of Evolutionary Biology, 29(6), 1247-1256.
  • Singer, S.M.,  J. G. Maloney and C. H. Coelho (2016) Chapter 40: Giardia lamblia. In Laboratory Models For Foodborne Infection. Taylor & Francis, New York. 
  • Singer, S. M. (2016). Control of giardiasis by interleukin-17 in humans and mice—are the questions all answered?. Clinical and Vaccine Immunology, 23(1), 2-5.
  • Solaymani‐Mohammadi, S., Lakhdari, O., Minev, I., Shenouda, S., Frey, B. F., Billeskov, R., … & Kagnoff, M. F. (2016). Lack of the programmed death‐1 receptor renders host susceptible to enteric microbial infection through impairing the production of the mucosal natural killer cell effector molecules. Journal of Leukocyte Biology, 99(3), 475-482.
  • Steidle, E. A., Chong, L. S., Wu, M., Crooke, E., Fiedler, D., Resnick, A. C., & Rolfes, R. J. (2016). A Novel Inositol Pyrophosphate Phosphatase in Saccharomyces cerevisiae Siw14 protein selectively cleaves the β-phosphate from 5-diphosphoinositol pentakisphosphate (5PP-IP5). Journal of Biological Chemistry, 291(13), 6772-6783.
  • Tosh, K. W., Mittereder, L., Bonne-Annee, S., Hieny, S., Nutman, T. B., Singer, S. M., … & Jankovic, D. (2016). The IL-12 response of primary human dendritic cells and monocytes to Toxoplasma gondii is stimulated by phagocytosis of live parasites rather than host cell invasion. The Journal of Immunology, 196(1), 345-356.
  • Walker, T., Huang, J., & Young, K. (2016). Neural stem and progenitor cells in nervous system function and therapy.
  • Wallen, M. M., Patterson, E. M., Krzyszczyk, E., & Mann, J. (2016). The ecological costs to females in a system with allied sexual coercion. Animal Behaviour, 115, 227-236.
  • Xie, T., Vora, A., Mulcahey, P. J., Nanescu, S. E., Singh, M., Choi, D. S., … & Hahm, J. I. (2016). Surface assembly configurations and packing preferences of fibrinogen mediated by the periodicity and alignment control of block copolymer nanodomains. ACS Nano, 10(8), 7705-7720.

Publications in 2015

  • Belitsky, B. R., Brinsmade, S. R., & Sonenshein, A. L. (2015). Intermediate levels of Bacillus subtilis CodY activity are required for derepression of the branched-chain amino acid permease, BraB. PLoS Genet, 11(10), e1005600.
  • Carroll, I. T., & Bansal, S. (2016). Livestock market data for modeling disease spread among US cattle. bioRxiv, 021980.
  • Cayton, H. L., Haddad, N. M., Gross, K., Diamond, S. E., & Ries, L. (2015). Do growing degree days predict phenology across butterfly species?. Ecology, 96(6), 1473-1479.
  • Cepero, L. C., Rosenwald, L. C., & Weiss, M. R. (2015). The relative importance of flower color and shape for the foraging monarch butterfly (Lepidoptera: Nymphalidae). Journal of Insect Behavior, 28(4), 499-511.
  • Chen, X. G., Jiang, X., Gu, J., Xu, M., Wu, Y., Deng, Y., … & Armbruster, P. (2015). Genome sequence of the Asian Tiger mosquito, Aedes albopictus, reveals insights into its biology, genetics, and evolution. Proceedings of the National Academy of Sciences, 112(44), E5907-E5915.
  • Coate, T. M., Spita, N. A., Zhang, K. D., Isgrig, K. T., & Kelley, M. W. (2015). Neuropilin-2/Semaphorin-3F-mediated repulsion promotes inner hair cell innervation by spiral ganglion neurons. Elife, 4, e07830.
  • Daniele, S. G., Béraud, D., Davenport, C., Cheng, K., Yin, H., & Maguire-Zeiss, K. A. (2015). Activation of MyD88-dependent TLR1/2 signaling by misfolded α-synuclein, a protein linked to neurodegenerative disorders. Science signaling, 8(376), ra45-ra45.
  • Dinsdale, E., Elgin, S. C., Grandgenett, N., Morgan, W., Rosenwald, A., Tapprich, W., … & Pauley, M. A. (2015). NIBLSE: A network for integrating bioinformatics into life sciences education. CBE—Life Sciences Education, 14(4), le3.
  • Eames, K., Bansal, S., Frost, S., & Riley, S. (2015). Six challenges in measuring contact networks for use in modelling. Epidemics, 10, 72-77.
  • de la Fuente, A. G., Errea, O., van Wijngaarden, P., Gonzalez, G. A., Kerninon, C., Jarjour, A. A., … & Huang, J. K. (2015). Vitamin D receptor–retinoid X receptor heterodimer signaling regulates oligodendrocyte progenitor cell differentiation. Journal of Cell Biology, 211(5), 975-985.
  • Funk, S., Bansal, S., Bauch, C. T., Eames, K. T., Edmunds, W. J., Galvani, A. P., & Klepac, P. (2015). Nine challenges in incorporating the dynamics of behaviour in infectious diseases models. Epidemics, 10, 21-25.
  • Ghosh, A. K., Wangsanut, T., Fonzi, W. A., & Rolfes, R. J. (2015). The GRF10 homeobox gene regulates filamentous growth in the human fungal pathogen Candida albicans. FEMS Yeast Research, 15(8), fov093.
  • Hannaford, A., Rosenwald, A., Carroll, L.M., Vijh, E., Kelly, B.B. (2015) Case Competitions: a New Frontier in Inter-Professional Health Education? MedEdPublish. pp. 1–14.
  • Heesterbeek, H., Anderson, R. M., Andreasen, V., Bansal, S., De Angelis, D., Dye, C., … & Hollingsworth, T. D. (2015). Modeling infectious disease dynamics in the complex landscape of global health. Science, 347(6227).
  • Huang, X., Poelchau, M. F., & Armbruster, P. A. (2015). Global transcriptional dynamics of diapause induction in non-blood-fed and blood-fed Aedes albopictus. PLoS Negl Trop Dis, 9(4), e0003724.
  • Johnson, S. S., Chevrette, M. G., Ehlmann, B. L., & Benison, K. C. (2015). Insights from the metagenome of an acid salt lake: the role of biology in an extreme depositional environment. PLoS One, 10(4), e0122869.
  • Kramer, S. C., & Bansal, S. (2015). Assessing the use of antiviral treatment to control influenza. Epidemiology & Infection, 143(8), 1621-1631.
  • Lee, E. C., Viboud, C., Simonsen, L., Khan, F., & Bansal, S. (2015). Detecting signals of seasonal influenza severity through age dynamics. BMC Infectious Diseases, 15(1), 587.
  • Maloney, J., Keselman, A., Li, E., & Singer, S. M. (2015). Macrophages expressing arginase 1 and nitric oxide synthase 2 accumulate in the small intestine during Giardia lamblia infection. Microbes and infection, 17(6), 462-467.
  • Mann, J., & Singh, L. (2015). Culture, diffusion, and networks in social animals. Emerging Trends in the Social and Behavioral Sciences: An Interdisciplinary, Searchable, and Linkable Resource, 1-16.
  • Mogi, M., Armbruster, P., Tuno, N., Campos, R., & Eritja, R. (2015). Simple indices provide insight to climate attributes delineating the geographic range of Aedes albopictus (Diptera: Culicidae) prior to worldwide invasion. Journal of Medical Entomology, 52(4), 647-657.
  • Moyon, S., Dubessy, A. L., Aigrot, M. S., Trotter, M., Huang, J. K., Dauphinot, L., … & Lubetzki, C. (2015). Demyelination causes adult CNS progenitors to revert to an immature state and express immune cues that support their migration. Journal of Neuroscience, 35(1), 4-20.
  • Nelson, T. M., Apprill, A., Mann, J., Rogers, T. L., & Brown, M. V. (2015). The marine mammal microbiome: current knowledge and future directions. Microbiology Australia, 36(1), 8-13.
  • Ries, L., & Oberhauser, K. (2015). A citizen army for science: quantifying the contributions of citizen scientists to our understanding of monarch butterfly biology. BioScience, 65(4), 419-430.
  • Oberhauser, K., Ries, L., Altizer, S., Ekstrum, J., Garland, M., Howard, E., Jepsen, S., Lovett, J., Monroe, M., Morris, G., et al. (2015) Citizen scientists and an iconic insect: 70 years and counting. In Monarchs in a changing world: Biology and conservation of an iconic butterfly. Cornell University Press, Ithaca. 
  • Patten, M. M., Carioscia, S. A., & Linnen, C. R. (2015). Biased introgression of mitochondrial and nuclear genes: a comparison of diploid and haplodiploid systems. Molecular Ecology, 24(20), 5200-5210.
  • Patterson, E. M., Krzyszczyk, E., & Mann, J. (2016). Age-specific foraging performance and reproduction in tool-using wild bottlenose dolphins. Behavioral Ecology, 27(2), 401-410.
  • Patterson, E. M., & Mann, J. (2015). Cetacean innovation. In Animal Creativity and Innovation (pp. 73-125). Academic Press.
  • Pellis, L., Ball, F., Bansal, S., Eames, K., House, T., Isham, V., & Trapman, P. (2015). Eight challenges for network epidemic models. Epidemics, 10, 58-62.
  • Pomeroy, L. W., Bansal, S., Tildesley, M., Moreno‐Torres, K. I., Moritz, M., Xiao, N., … & Garabed, R. B. (2017). Data‐Driven Models of Foot‐and‐Mouth Disease Dynamics: A Review. Transboundary and Emerging Diseases, 64(3), 716-728.
  • Quevillon, L. E., Hanks, E. M., Bansal, S., & Hughes, D. P. (2015). Social, spatial, and temporal organization in a complex insect society. Scientific Reports, 5, 13393.
  • Raguso, R., & Weiss, M. R. (2015). Concerted changes in floral colour and scent, and the importance of spatio-temporal variation in floral volatiles. Journal of the Indian Institute of Science, 95(1), 69-92.
  • Ries, L., Oberhauser, K., Taron, D., Battin, J., Rendon-Salinas, E., Altizer, S., & Nail, K. (2015). Connecting eastern monarch population dynamics across their migratory cycle. Monarchs in a Changing World: Biology and Conservation of an Iconic Insect. Cornell University Press, Ithaca, NY, 268-281.
  • Ries, L., Taron, D. J., & Rendón-Salinas, E. (2015). The disconnect between summer and winter monarch trends for the eastern migratory population: Possible links to differing drivers. Annals of the Entomological Society of America, 108(5), 691-699.
  • Ries, L., & Oberhauser, K. (2015). A citizen army for science: quantifying the contributions of citizen scientists to our understanding of monarch butterfly biology. BioScience, 65(4), 419-430.
  • Leung, W., Shaffer, C. D., Reed, L. K., Smith, S. T., Barshop, W., Dirkes, W., … & Yuan, H. (2015). Drosophila Muller F elements maintain a distinct set of genomic properties over 40 million years of evolution. G3: Genes, Genomes, Genetics, 5(5), 719-740.
  • Saritas-Yildirim, B., Childers, C. P., Elsik, C. G., & Silva, E. M. (2015). Identification of REST targets in the Xenopus tropicalis genome. BMC Genomics, 16(1), 380.
  • Sassi, M., Sharma, D., Brinsmade, S. R., Felden, B., & Augagneur, Y. (2015). Genome sequence of the clinical isolate Staphylococcus aureus subsp. aureus strain UAMS-1. Genome announcements, 3(1).
  • Taron, D., & Ries, L. (2015). Butterfly monitoring for Conservation. In Butterfly Conservation in North America (pp. 35-57). Springer, Dordrecht.
  • Úbeda, F., Patten, M. M., & Wild, G. (2015). On the origin of sex chromosomes from meiotic drive. Proceedings of the Royal Society B: Biological Sciences, 282(1798), 20141932.
  • Whittington, N., Cunningham, D., Le, T. K., De Maria, D., & Silva, E. M. (2015). Sox21 regulates the progression of neuronal differentiation in a dose-dependent manner. Developmental biology, 397(2), 237-247.
  • Publications in 2014
  • Aiello, C. M., Nussear, K. E., Walde, A. D., Esque, T. C., Emblidge, P. G., Sah, P., … & Hudson, P. J. (2014). Disease dynamics during wildlife translocations: disruptions to the host population and potential consequences for transmission in desert tortoise contact networks. Animal Conservation, 17, 27-39.
  • Arora, G., Russell, J., Rosenwald, A.. Leaving the science behind: A failure resulting from poor curriculum design. Journal of Interactive Technology and Pedagogy. 
  • Brinsmade, S. R., Alexander, E. L., Livny, J., Stettner, A. I., Segrè, D., Rhee, K. Y., & Sonenshein, A. L. (2014). Hierarchical expression of genes controlled by the Bacillus subtilis global regulatory protein CodY. Proceedings of the National Academy of Sciences, 111(22), 8227-8232.
  • Cords, M., & Mann, J. (2014). Social conflict management in primates: is there a case for dolphins?. In Primates and Cetaceans (pp. 207-212). Springer, Tokyo.
  • Cunningham, D., & Casey, E. S. (2014). Spatiotemporal development of the embryonic nervous system of Saccoglossus kowalevskii. Developmental Biology, 386(1), 252-263.
  • Daniele, S. G., Edwards, A. A., & Maguire-Zeiss, K. A. (2014). Isolation of cortical microglia with preserved immunophenotype and functionality from murine neonates. Journal of Visualized Experiments, (83), e51005.
  • Denlinger, D. L., & Armbruster, P. A. (2014). Mosquito diapause. Annual Review of Entomology, 59, 73-93.
  • Diamond, S. E., Cayton, H., Wepprich, T., Jenkins, C. N., Dunn, R. R., Haddad, N. M., & Ries, L. (2014). Unexpected phenological responses of butterflies to the interaction of urbanization and geographic temperature. Ecology, 95(9), 2613-2621.
  • Diffendorfer, J. E., Loomis, J. B., Ries, L., Oberhauser, K., Lopez‐Hoffman, L., Semmens, D., … & Wiederholt, R. (2014). National valuation of monarch butterflies indicates an untapped potential for incentive‐based conservation. Conservation Letters, 7(3), 253-262.
  • Haig, D., Ubeda, F., & Patten, M. M. (2014). Specialists and generalists: the sexual ecology of the genome. Cold Spring Harbor Perspectives in Biology, 6(9), a017525.
  • Huang, C. C., Bose, J. K., Majumder, P., Lee, K. H., Huang, J. T. J., Huang, J. K., & Shen, C. K. J. (2014). Metabolism and mis-metabolism of the neuropathological signature protein TDP-43. Journal of Cell Science, 127(14), 3024-3038.
  • Johnson, S.S. (2014) O-Rings. In The Best American Science and Nature Writing (pp. 107-114). Houghton Mifflin Harcourt, Boston.
  • Karniski, Caitlin, Eric M. Patterson, Ewa Krzyszczyk, Vivienne Foroughirad, Margaret A. Stanton, and Janet Mann. “A comparison of survey and focal follow methods for estimating individual activity budgets of cetaceans.” Marine Mammal Science 31, no. 3 (2015): 839-852.
  • Kopps, A. M., Ackermann, C. Y., Sherwin, W. B., Allen, S. J., Bejder, L., & Krützen, M. (2014). Cultural transmission of tool use combined with habitat specializations leads to fine-scale genetic structure in bottlenose dolphins. Proceedings of the Royal Society B: Biological Sciences, 281(1782), 20133245.
  • Kriel, A., Brinsmade, S. R., Jessica, L. T., Tehranchi, A. K., Bittner, A. N., Sonenshein, A. L., & Wang, J. D. (2014). GTP dysregulation in Bacillus subtilis cells lacking (p) ppGpp results in phenotypic amino acid auxotrophy and failure to adapt to nutrient downshift and regulate biosynthesis genes. Journal of Bacteriology, 196(1), 189-201.
  • Krützen, M., Kreicker, S., MacLeod, C. D., Learmonth, J., Kopps, A. M., Walsham, P., & Allen, S. J. (2014). Cultural transmission of tool use by Indo-Pacific bottlenose dolphins (Tursiops sp.) provides access to a novel foraging niche. Proceedings of the Royal Society B: Biological Sciences, 281(1784), 20140374.
  • Li, E., Liu, M., & Singer, S. M. (2014). Resistance to reinfection in mice as a vaccine model for giardiasis. Human Vaccines & Immunotherapeutics, 10(6), 1536-1543.
  • Mann, J., & Würsig, B. (2014). Observing and quantifying cetacean behavior in the wild: current problems, limitations, and future directions. In Primates and Cetaceans (pp. 335-344). Springer, Tokyo.
  • Patten, M. M., Ross, L., Curley, J. P., Queller, D. C., Bonduriansky, R., & Wolf, J. B. (2014). The evolution of genomic imprinting: theories, predictions and empirical tests. Heredity, 113(2), 119-128.
  • Patten, M. M. (2014). Meiotic drive influences the outcome of sexually antagonistic selection at a linked locus. Journal of Evolutionary Biology, 27(11), 2360-2370.
  • Poelchau, M. F., Huang, X., Goff, A., Reynolds, J., & Armbruster, P. (2014). An experimental and bioinformatics protocol for RNA-seq analyses of photoperiodic diapause in the Asian Tiger mosquito, Aedes albopictus. Journal of Visualized Experiments (93), e51961.
  • Raft, S., Coate, T. M., Kelley, M. W., Crenshaw III, E. B., & Wu, D. K. (2014). Pou3f4-mediated regulation of ephrin-b2 controls temporal bone development in the mouse. PloS One, 9(10), e109043.
  • Rosenwald, A. G., Murray, B., Toth, T., Madupu, R., Kyrillos, A., & Arora, G. (2014). Evidence for horizontal gene transfer between Chlamydophila pneumoniae and Chlamydia phage. Bacteriophage, 4(4), e965076.
  • Sah, P., Singh, L. O., Clauset, A., & Bansal, S. (2014). Exploring community structure in biological networks with random graphs. BMC Bioinformatics, 15(1), 1-14.
  • Saritas‐Yildirim, B., & Silva, E. M. (2014). The role of targeted protein degradation in early neural development. Genesis, 52(4), 287-299.’
  • Shaffer, C. D., Alvarez, C. J., Bednarski, A. E., Dunbar, D., Goodman, A. L., Reinke, C., … & Bazinet, C. (2014). A course-based research experience: how benefits change with increased investment in instructional time. CBE—Life Sciences Education, 13(1), 111-130.
  • Singh, L.O., Mann, J. (2014) Modeling social preferences based on social interactions. In: Encyclopedia of Social Networks and Data Mining. Springer-Verlag, New York, New York.
  • Stanton, M., Mann, J. (2014) Social Network Analysis: Applications to primate and cetacean societies. In Primates and Cetaceans: Field Research and Conservation of Complex Mammalian Societies. pp. 345-354, Springer, New York. 
  • Stanton, M., Mann, J. (2014) Shark Bay bottlenose dolphins: A case study for defining and measuring
  • sociality. Applications to primate and cetacean societies. In Primates and Cetaceans: Field Research and Conservation of Complex Mammalian Societies. pp. 345-354, Springer, New York. 
  • Tsai, Y. J. J., Barrows, E. M., & Weiss, M. R. (2014). Pure Self‐Assessment of Size During Male–Male Contests in the Parasitoid Wasp N asonia vitripennis. Ethology, 120(8), 816-824.
  • Tsai, Y. J. J., Barrows, E. M., & Weiss, M. R. (2014). Why do larger and older males win contests in the parasitoid wasp Nasonia vitripennis?. Animal Behaviour, 91, 151-159.
  • Publications in 2013
  • Arab, A., & Wimp, G. M. (2013). Plant production and alternate prey channels impact the abundance of top predators. Oecologia, 173(2), 331-341.
  • Bartelt, L. A., Roche, J., Kolling, G., Bolick, D., Noronha, F., Naylor, C., … & Guerrant, R. (2013). Persistent G. lamblia impairs growth in a murine malnutrition model. The Journal of Clinical Investigation, 123(6), 2672-2684.
  • Butler, L. K., Ries, L., Bisson, I. A., Hayden, T. J., Wikelski, M. M., & Romero, L. M. (2013). Opposite but analogous effects of road density on songbirds with contrasting habitat preferences. Animal Conservation, 16(1), 77-85.
  • Béraud, D., Hathaway, H. A., Trecki, J., Chasovskikh, S., Johnson, D. A., Johnson, J. A., … & Maguire-Zeiss, K. A. (2013). Microglial activation and antioxidant responses induced by the Parkinson’s disease protein α-synuclein. Journal of Neuroimmune Pharmacology, 8(1), 94-117.
  • Camacho, A., Huang, J. K., Delint‐Ramirez, I., Yew Tan, C., Fuller, M., Lelliott, C. J., … & Franklin, R. J. (2013). Peroxisome proliferator‐activated receptor gamma‐coactivator‐1 alpha coordinates sphingolipid metabolism, lipid raft composition and myelin protein synthesis. European Journal of Neuroscience, 38(5), 2672-2683.
  • Coate, T. M., & Kelley, M. W. (2013, May). Making connections in the inner ear: recent insights into the development of spiral ganglion neurons and their connectivity with sensory hair cells. In Seminars in Cell & Developmental Biology (Vol. 24, No. 5, pp. 460-469). Academic Press.
  • Dowling, Z., Ladeau, S. L., Armbruster, P., Biehler, D., & Leisnham, P. T. (2013). Socioeconomic status affects mosquito (Diptera: Culicidae) larval habitat type availability and infestation level. Journal of Medical Entomology, 50(4), 764-772.
  • Dowling, Z., Armbruster, P., LaDeau, S. L., DeCotiis, M., Mottley, J., & Leisnham, P. T. (2013). Linking mosquito infestation to resident socioeconomic status, knowledge, and source reduction practices in suburban Washington, DC. Ecohealth, 10(1), 36-47.
  • Driver, E. C., Sillers, L., Coate, T. M., Rose, M. F., & Kelley, M. W. (2013). The Atoh1-lineage gives rise to hair cells and supporting cells within the mammalian cochlea. Developmental Biology, 376(1), 86-98.
  • Foroughirad, V., & Mann, J. (2013). Long-term impacts of fish provisioning on the behavior and survival of wild bottlenose dolphins. Biological Conservation, 160, 242-249.
  • Gatti, J. W., Smithgall, M. C., Paranjape, S. M., Rolfes, R. J., & Paranjape, M. (2013). Using electrospun poly (ethylene-oxide) nanofibers for improved retention and efficacy of bacteriolytic antibiotics. Biomedical Microdevices, 15(5), 887-893.
  • Kopps, A. M., Krützen, M., Allen, S. J., Bacher, K., & Sherwin, W. B. (2014). Characterizing the socially transmitted foraging tactic “sponging” by bottlenose dolphins (Tursiops sp.) in the western gulf of Shark Bay, Western Australia. Marine Mammal Science, 30(3), 847-863.
  • Mann, J., & Patterson, E. M. (2013). Tool use by aquatic animals. Philosophical Transactions of the Royal Society B: Biological Sciences, 368(1630), 20120424.
  • Martin, R., Safaee, S. D., Somsamouth, K., Mounivong, B., Sinclair, R., Bansal, S., & Singh, P. N. (2013). Mixed methods pilot study of sharing behaviors among waterpipe smokers of rural Lao PDR: implications for infectious disease transmission. International Journal of Environmental Research and Public Health, 10(6), 2120-2132.
  • Patten, M. M., Úbeda, F., & Haig, D. (2013). Sexual and parental antagonism shape genomic architecture. Proceedings of the Royal Society B: Biological Sciences, 280(1770), 20131795.
  • Poelchau, M. F., Reynolds, J. A., Elsik, C. G., Denlinger, D. L., & Armbruster, P. A. (2013). RNA-Seq reveals early distinctions and late convergence of gene expression between diapause and quiescence in the Asian tiger mosquito, Aedes albopictus. Journal of Experimental Biology, 216(21), 4082-4090.
  • Poelchau, M. F., Reynolds, J. A., Elsik, C. G., Denlinger, D. L., & Armbruster, P. A. (2013). Deep sequencing reveals complex mechanisms of diapause preparation in the invasive mosquito, Aedes albopictus. Proceedings of the Royal Society B: Biological Sciences, 280(1759), 20130143.
  • Poelchau, M. F., Reynolds, J. A., Denlinger, D. L., Elsik, C. G., & Armbruster, P. A. (2013). Transcriptome sequencing as a platform to elucidate molecular components of the diapause response in the Asian tiger mosquito Aedes albopictus. Physiological Entomology, 38(2), 173-181.
  • Solaymani-Mohammadi, S., & Singer, S. M. (2013). Regulation of intestinal epithelial cell cytoskeletal remodeling by cellular immunity following gut infection. Mucosal Immunology, 6(2), 369-378.
  • Stack, J. C., Bansal, S., Kumar, V. A., & Grenfell, B. (2013). Inferring population-level contact heterogeneity from common epidemic data. Journal of the Royal Society Interface, 10(78), 20120578.
  • Syed, Y. A., Baer, A., Hofer, M. P., González, G. A., Rundle, J., Myrta, S., … & Lubec, G. (2013). Inhibition of phosphodiesterase‐4 promotes oligodendrocyte precursor cell differentiation and enhances CNS remyelination. EMBO Molecular Medicine, 5(12), 1918-1934.
  • Tako, E. A., Hassimi, M. F., Li, E., & Singer, S. M. (2013). Transcriptomic analysis of the host response to Giardia duodenalis infection reveals redundant mechanisms for parasite control. MBio, 4(6).
  • Uma, D., Durkee, C., Herzner, G., & Weiss, M. (2013). Double deception: ant-mimicking spiders elude both visually-and chemically-oriented predators. PloS One, 8(11), e79660.
  • Wimp, G. M., Murphy, S. M., Lewis, D., Douglas, M. R., Ambikapathi, R., Gratton, C., & Denno, R. F. (2013). Predator hunting mode influences patterns of prey use from grazing and epigeic food webs. Oecologia, 171(2), 505-515.

Publications in 2012

  • Bansal, S., & Meyers, L. A. (2012). The impact of past epidemics on future disease dynamics. Journal of Theoretical Biology, 309, 176-184.
  • Barrows EM, Howard AE, & Steury BW. (2012) Fruit production and phenology of Phacelia covillei S.
  • Watson (Hydrophyllaceae) in the Potomac Gorge area of Maryland and Virginia. Marilandica. 3(1).
  • Braasch, J., Wimp, G. M., & Kaplan, I. (2012). Testing for phytochemical synergism: arthropod community responses to induced plant volatile blends across crops. Journal of Chemical Ecology, 38(10), 1264-1275.
  • Béraud, D., & Maguire-Zeiss, K. A. (2012). Misfolded α-synuclein and toll-like receptors: therapeutic targets for Parkinson’s disease. Parkinsonism & Related Disorders, 18, S17-S20.
  • Coate, T. M., Raft, S., Zhao, X., Ryan, A. K., Crenshaw III, E. B., & Kelley, M. W. (2012). Otic mesenchyme cells regulate spiral ganglion axon fasciculation through a Pou3f4/EphA4 signaling pathway. Neuron, 73(1), 49-63.
  • Conant, K., T Lim, S., Randall, B., & A Maguire-Zeiss, K. (2012). Matrix metalloproteinase dependent cleavage of cell adhesion molecules in the pathogenesis of CNS dysfunction with HIV and methamphetamine. Current HIV research, 10(5), 384-391.
  • Fagan WF, & Ries L. (2012) Edge effects. Berkshire Encyclopedia of Sustainability. Great Barrington, MA (5) 118–124.
  • Huang, J. K., & Franklin, R. J. (2012). Current status of myelin replacement therapies in multiple sclerosis.  Progress in Brain Research (Vol. 201, pp. 219-231). Elsevier.
  • Huang, J. K., Ferrari, C. C., de Castro, G. M., Lafont, D., Zhao, C., Zaratin, P., … & Franklin, R. J. (2012). Accelerated axonal loss following acute CNS demyelination in mice lacking protein tyrosine phosphatase receptor type Z. The American Journal of Pathology, 181(5), 1518-1523.
  • Kamda, J. D., Nash, T. E., & Singer, S. M. (2012). Giardia duodenalis: dendritic cell defects in IL-6 deficient mice contribute to susceptibility to intestinal infection. Experimental Parasitology, 130(3), 288-291.
  • Kopps, A. M., & Sherwin, W. B. (2012). Modelling the emergence and stability of a vertically transmitted cultural trait in bottlenose dolphins. Animal Behaviour, 84(6), 1347-1362.
  • Krzyszczyk, E., Kopps, A. M., Bacher, K., Smith, H., Stephens, N., Meighan, N. A., & Mann, J. (2013). A report on six cases of seagrass-associated gastric impaction in bottlenose dolphins (Tursiops sp.). Marine Mammal Science, 29(3), 548-554.
  • Krzyszczyk, E., & Mann, J. (2012). Why become speckled? Ontogeny and function of speckling in Shark Bay bottlenose dolphins (Tursiops sp.) 1. Marine Mammal Science, 28(2), 295-307.
  • Manlandro, C. M. A., Palanivel, V. R., Schorr, E. B., Mihatov, N., Antony, A. A., & Rosenwald, A. G. (2012). Mon2 is a negative regulator of the monomeric G protein, Arl1. FEMS yeast research, 12(6), 637-650.
  • Mann, J., Stanton, M. A., Patterson, E. M., Bienenstock, E. J., & Singh, L. O. (2012). Social networks reveal cultural behaviour in tool-using dolphins. Nature Communications, 3(1), 1-8.
  • Meneses, N., Bailey, J. K., Allan, G. J., Bangert, R. K., Bowker, M. A., Rehill, B. J., … & Whitham, T. G. (2012). Arthropod community similarity in clonal stands of aspen: a test of the genetic similarity rule. Ecoscience, 19(1), 48-58.
  • Mogi, M., Armbruster, P., & Fonseca, D. M. (2014). Analyses of the northern distributional limit of Aedes albopictus (Diptera: Culicidae) with a simple thermal index. Journal of Medical Entomology, 49(6), 1233-1243.
  • Murphy, S. M., Wimp, G. M., Lewis, D., & Denno, R. F. (2012). Nutrient presses and pulses differentially impact plants, herbivores, detritivores and their natural enemies. PloS One, 7(8), e43929.
  • North, H. A., Clifford, M. A., & Donoghue, M. J. (2013). ‘Til Eph do us part’: intercellular signaling via Eph receptors and ephrin ligands guides cerebral cortical development from birth through maturation. Cerebral Cortex, 23(8), 1765-1773.
  • Patterson, E. M., & Mann, J. (2012). Look, no hands!. Behavioral and Brain Sciences, 35(4), 235.
  • Reynolds, J. A., Poelchau, M. F., Rahman, Z., Armbruster, P. A., & Denlinger, D. L. (2012). Transcript profiling reveals mechanisms for lipid conservation during diapause in the mosquito, Aedes albopictus. Journal of Insect Physiology, 58(7), 966-973.
  • Rodrigues, D., & Weiss, M. R. (2012). Reward Tracking and Memory Decay in the Monarch Butterfly, D anaus plexippus L.(L epidoptera: N ymphalidae). Ethology, 118(11), 1122-1131.
  • Romanowski, K., Zaborin, A., Valuckaite, V., Rolfes, R. J., Babrowski, T., Bethel, C., … & Alverdy, J. C. (2012). Candida albicans isolates from the gut of critically ill patients respond to phosphate limitation by expressing filaments and a lethal phenotype. PLoS One, 7(1), e30119.
  • Rosenwald, A. G., Russell, J. S., & Arora, G. (2012). The genome solver website: a virtual space fostering high impact practices for undergraduate biology. Journal of Microbiology & Biology Education: JMBE, 13(2), 188.
  • Rosenwald, A. G., Arora, G. S., Madupu, R., Roecklein-Canfield, J., & Russell, J. S. (2012). The human microbiome project: an opportunity to engage undergraduates in research. Procedia Computer Science, 9, 540-549.
  • Soykan, C. U., Brand, L. A., Ries, L., Stromberg, J. C., Hass, C., Simmons Jr, D. A., … & Sabo, J. L. (2012). Multitaxonomic diversity patterns along a desert riparian–upland gradient. PLoS One, 7(1), e28235.
  • Stanton, M. A., & Mann, J. (2012). Early social networks predict survival in wild bottlenose dolphins. PloS One, 7(10), e47508.
  • Summa, K., Urbanski, J. M., Zhao, X., Poelchau, M., & Armbruster, P. (2012). Cloning and sequence analysis of the circadian clock genes period and timeless in Aedes albopictus (Diptera: Culicidae). Journal of Medical Entomology, 49(3), 777-782.
  • Tsai, Y. J. J., & Mann, J. (2013). Dispersal, philopatry, and the role of fission‐fusion dynamics in bottlenose dolphins. Marine Mammal Science, 29(2), 261-279.
  • Uma, D. B., & Weiss, M. R. (2012). Flee or fight: ontogenetic changes in the behavior of cobweb spiders in encounters with spider-hunting wasps. Environmental Entomology, 41(6), 1474-1480.
  • Urbanski, J., Mogi, M., O’Donnell, D., DeCotiis, M., Toma, T., & Armbruster, P. (2012). Rapid adaptive evolution of photoperiodic response during invasion and range expansion across a climatic gradient. The American Naturalist, 179(4), 490-500.
  • Ydenberg, C. A., Stein, R. A., & Rose, M. D. (2012). Cdc42p and Fus2p act together late in yeast cell fusion. Molecular Biology of the Cell, 23(7), 1208-1218.
  • Zipkin, E. F., Ries, L., Reeves, R., Regetz, J., & Oberhauser, K. S. (2012). Tracking climate impacts on the migratory monarch butterfly. Global Change Biology, 18(10), 3039-3049.

Publications in 2011

  • Archer, T. C., Jin, J., & Casey, E. S. (2011). Interaction of Sox1, Sox2, Sox3 and Oct4 during primary neurogenesis. Developmental Biology, 350(2), 429-440.
  • Bansal, S., Bhowmick, S., & Paymal, P. (2011). Fast community detection for dynamic complex networks. In Complex Networks (pp. 196-207). Springer, Berlin, Heidelberg.
  • Barrows, E. M. (2011). Animal behavior desk reference: a dictionary of animal behavior, ecology, and evolution. CRC Press.
  • Barrows EM, Howard AF, & Steury BW (2011). Phenology, insect associates, and fruiting of Valeriana
  • Pauciflora michaux (Valerianaceae) in the Potomac River Gorge area of Maryland and Virginia, United States. Marilandica. 2(2), 6–10.
  • Blackiston, D., Briscoe, A. D., & Weiss, M. R. (2011). Color vision and learning in the monarch butterfly, Danaus plexippus (Nymphalidae). Journal of Experimental Biology, 214(3), 509-520.
  • Brinsmade, S. R., & Sonenshein, A. L. (2011). Dissecting complex metabolic integration provides direct genetic evidence for CodY activation by guanine nucleotides. Journal of Bacteriology, 193(20), 5637-5648.
  • Béraud, D., Twomey, M., Bloom, B., Mittereder, A., Neitzke, K., Ton, V., … & Maguire-Zeiss, K. A. (2011). α-Synuclein alters toll-like receptor expression. Frontiers in Neuroscience, 5, 80.
  • Clifford, M. A., Kanwal, J. K., Dzakpasu, R., & Donoghue, M. J. (2011). EphA4 expression promotes network activity and spine maturation in cortical neuronal cultures. Neural Development, 6(1), 21.
  • Conant, K., Lonskaya, I., Szklarczyk, A., Krall, C., Steiner, J., Maguire‐Zeiss, K., & Lim, S. T. (2011). Methamphetamine‐associated cleavage of the synaptic adhesion molecule intercellular adhesion molecule‐5. Journal of Neurochemistry, 118(4), 521-532.
  • Connor, R. C., Watson-Capps, J. J., Sherwin, W. B., & Krützen, M. (2011). A new level of complexity in the male alliance networks of Indian Ocean bottlenose dolphins (Tursiops sp.). Biology Letters, 7(4), 623-626.
  • Durkee, C. A., Weiss, M. R., & Uma, D. B. (2011). Ant mimicry lessens predation on a North American jumping spider by larger salticid spiders. Environmental Entomology, 40(5), 1223-1231.
  • Fell, G. L., Munson, A. M., Croston, M. A., & Rosenwald, A. G. (2011). Identification of yeast genes involved in K+ homeostasis: loss of membrane traffic genes affects K+ uptake. G3: Genes, Genomes, Genetics, 1(1), 43-56.
  • Feng, L. R., & Maguire-Zeiss, K. A. (2011). Dopamine and paraquat enhance α-synuclein-induced alterations in membrane conductance. Neurotoxicity Research, 20(4), 387.
  • Frère, C. H., Mann, J., Krützen, M., Connor, R. C., Bejder, L., & Sherwin, W. B. (2011). Nature and nurture: a step towards investigating their interactions in the wild. Communicative & Integrative Biology, 4(2), 192-193.
  • Huang, J. K., Jarjour, A. A., Oumesmar, B. N., Kerninon, C., Williams, A., Krezel, W., … & Chambon, P. (2011). Retinoid X receptor gamma signaling accelerates CNS remyelination. Nature Neuroscience, 14(1), 45-53.
  • Huang, J. K., Fancy, S. P., Zhao, C., Rowitch, D. H., & Franklin, R. J. (2011). Myelin regeneration in multiple sclerosis: targeting endogenous stem cells. Neurotherapeutics, 8(4), 650-658.
  • Huang, J. K., Jarjour, A. A., Ffrench-Constant, C., & Franklin, R. J. (2011). Retinoid X receptors as a potential avenue for regenerative medicine in multiple sclerosis. Expert Review of Neurotherapeutics, 11(4), 467-468.
  • Huang, J. K., & Franklin, R. J. (2011). Regenerative medicine in multiple sclerosis: identifying pharmacological targets of adult neural stem cell differentiation. Neurochemistry International, 59(3), 329-332.
  • Immler, S., Hamilton, M. B., Poslusny, N. J., Birkhead, T. R., & Epifanio, J. M. (2011). Post‐mating reproductive barriers in two unidirectionally hybridizing sunfish (Centrarchidae: Lepomis). Journal of Evolutionary Biology, 24(1), 111-120.
  • Koenig, W. D., Ries, L., Olsen, V. B. K., & Liebhold, A. M. (2011). Avian predators are less abundant during periodical cicada emergences, but why?. Ecology, 92(3), 784-790.
  • Leviyang, S., & Hamilton, M. B. (2011). Properties of Weir and Cockerham’s Fst estimators and associated bootstrap confidence intervals. Theoretical Population Biology, 79(1-2), 39-52.
  • Lima, B. P., Antelmann, H., Gronau, K., Chi, B. K., Becher, D., Brinsmade, S. R., & Wolfe, A. J. (2011). Involvement of protein acetylation in glucose‐induced transcription of a stress‐responsive promoter. Molecular Microbiology, 81(5), 1190-1204.
  • Mallory, H. S., & Weiss, M. R. (2011). Science in your own backyard: using locally abundant caterpillars & plants to teach about herbivory. The American Biology Teacher, 73(8), 463-466.
  • Patterson, E. M., & Mann, J. (2011). The ecological conditions that favor tool use and innovation in wild bottlenose dolphins (Tursiops sp.). PLoS One, 6(7), e22243.
  • Poelchau, M. F., Reynolds, J. A., Denlinger, D. L., Elsik, C. G., & Armbruster, P. A. (2011). A de novo transcriptome of the Asian tiger mosquito, Aedes albopictus, to identify candidate transcripts for diapause preparation. BMC Genomics, 12(1), 619.
  • Rogers, C. D., Ferzli, G. S., & Casey, E. S. (2011). The response of early neural genes to FGF signaling or inhibition of BMP indicate the absence of a conserved neural induction module. BMC Developmental Biology, 11(1), 74.
  • Rosenwald, A. G. (2011). Women on the Verge of a Glass-ceiling Breakdown.
  • Solaymani-Mohammadi, S., & Singer, S. M. (2011). Host immunity and pathogen strain contribute to intestinal disaccharidase impairment following gut infection. The Journal of Immunology, 187(7), 3769-3775.
  • Stanton, M. A., Gibson, Q. A., & Mann, J. (2011). When mum’s away: a study of mother and calf ego networks during separations in wild bottlenose dolphins (Tursiops sp.). Animal Behaviour, 82(2), 405-412.
  • Úbeda, F., Haig, D., & Patten, M. M. (2011). Stable linkage disequilibrium owing to sexual antagonism. Proceedings of the Royal Society B: Biological Sciences, 278(1707), 855-862.
  • Welch, D., Bansal, S., & Hunter, D. R. (2011). Statistical inference to advance network models in epidemiology. Epidemics, 3(1), 38-45.
  • Williams, C. W., & Elmendorf, H. G. (2011). Identification and analysis of the RNA degrading complexes and machinery of Giardia lamblia using an in silico approach. BMC Genomics, 12(1), 586.
  • Wimp, G. M., Murphy, S. M., Lewis, D., & Ries, L. (2011). Do edge responses cascade up or down a multi‐trophic food web?. Ecology Letters, 14(9), 863-870.

Publications in 2010

  • Adedoyin, M. O., Vicini, S., & Neale, J. H. (2010). Endogenous N-acetylaspartylglutamate (NAAG) inhibits synaptic plasticity/transmission in the amygdala in a mouse inflammatory pain model. Molecular Pain, 6(1), 60.
  • Elsik, C. G. (2010). The pea aphid genome sequence brings theories of insect defense into question. Genome Biology, 11(2), 1-3.
  • Frère, C. H., Krützen, M., Mann, J., Connor, R. C., Bejder, L., & Sherwin, W. B. (2010). Social and genetic interactions drive fitness variation in a free-living dolphin population. Proceedings of the National Academy of Sciences, 107(46), 19949-19954.
  • Frere, C. H., Krützen, M., Kopps, A. M., Ward, P., Mann, J., & Sherwin, W. B. (2010). Inbreeding tolerance and fitness costs in wild bottlenose dolphins. Proceedings of the Royal Society B: Biological Sciences, 277(1694), 2667-2673.
  • Frère, C. H., Krützen, M., Mann, J., Watson-Capps, J. J., Tsai, Y. J., Patterson, E. M., … & Sherwin, W. B. (2010). Home range overlap, matrilineal and biparental kinship drive female associations in bottlenose dolphins. Animal Behaviour, 80(3), 481-486.
  • Frère, C. H., Krzyszczyk, E., Patterson, E. M., Hunter, S., Ginsburg, A., & Mann, J. (2010). Thar she blows! A novel method for DNA collection from cetacean blow. PloS One, 5(8), e12299.
  • Kesleman, A., Singer, S.M. (2010) Immunity to Giardiasis. In: Brandonisio, O., Jirillo, E., Immune Response to Parasitic Infections: Protozoa. (1),  p. 78–97. Benthem, New York, New York.
  • North, H. A., Karim, A., Jacquin, M. F., & Donoghue, M. J. (2010). EphA4 is necessary for spatially selective peripheral somatosensory topography. Developmental Dynamics, 239(2), 630-638.
  • O’Donnell, D., & Armbruster, P. (2010). Inbreeding depression affects life-history traits but not infection by Plasmodium gallinaceum in the Asian tiger mosquito, Aedes albopictus. Infection, Genetics and Evolution, 10(5), 669-677.
  • Parvaresh, K. C., Huber, A. M., Brochin, R. L., Bacon, P. L., McCall, G. E., Huey, K. A., & Hyatt, J. P. K. (2010). Acute vascular endothelial growth factor expression during hypertrophy is muscle phenotype specific and localizes as a striated pattern within fibres. Experimental Physiology, 95(11), 1098-1106.
  • Sharara, H., Singh, L., Getoor, L., & Mann, J. (2011). Understanding actor loyalty to event-based groups in affiliation networks. Social Network Analysis and Mining, 1(2), 115-126.
  • Singh, L., Bienenstock, E. J., & Mann, J. (2010). Perspectives on social network analysis for observational scientific data. In Handbook of Social Network Technologies and Applications (pp. 147-168). Springer, Boston, MA.
  • Solaymani-Mohammadi, S., Genkinger, J. M., Loffredo, C. A., & Singer, S. M. (2010). A meta-analysis of the effectiveness of albendazole compared with metronidazole as treatments for infections with Giardia duodenalis. PLoS Negl Trop Dis, 4(5), e682.
  • Solaymani-Mohammadi, S., & Singer, S. M. (2010). Giardia duodenalis: the double-edged sword of immune responses in giardiasis. Experimental Parasitology, 126(3), 292-297.
  • Thévenon, A. D., Zhou, J. A., Megnekou, R., Ako, S., Leke, R. G., & Taylor, D. W. (2010). Elevated levels of soluble TNF receptors 1 and 2 correlate with Plasmodium falciparum parasitemia in pregnant women: potential markers for malaria-associated inflammation. The Journal of Immunology, 185(11), 7115-7122.
  • Urbanski, J. M., Benoit, J. B., Michaud, M. R., Denlinger, D. L., & Armbruster, P. (2010). The molecular physiology of increased egg desiccation resistance during diapause in the invasive mosquito, Aedes albopictus. Proceedings of the Royal Society B: Biological Sciences, 277(1694), 2683-2692.
  • Urbanski, J. M., Aruda, A., & Armbruster, P. (2010). A transcriptional element of the diapause program in the Asian tiger mosquito, Aedes albopictus, identified by suppressive subtractive hybridization. Journal of Insect Physiology, 56(9), 1147-1154.
  • Wimp, G. M., Murphy, S. M., Finke, D. L., Huberty, A. F., & Denno, R. F. (2010). Increased primary production shifts the structure and composition of a terrestrial arthropod community. Ecology, 91(11), 3303-3311.