Publication 2016 


Aiello CM, Nussear KE, Esque TC, Emblidge PG, Sah P, Bansal S, Hudson PJ. Host contact and
      shedding patterns clarify variation in pathogen exposure and transmission in threatened tortoise
      Gopherus agassizii: implications for disease modelling and management. Journal of Animal
      Ecology. 2016;85(3):829–842.

Allen M, Ghosh S, Ahern GP, Villapol S, Maguire-Zeiss KA, Conant K. Protease induced plasticity:
     matrix metalloproteinase-1 promotes neurostructural changes through activation of protease
     activated receptor 1. Scientific Reports. 2016;6(1).

Armbruster PA. Photoperiodic Diapause and the Establishment of Aedes albopictus(Diptera:
     Culicidae) in North America. Journal of Medical Entomology. 2016;53(5):1013–1023.

Babaei Z, Malihi N, Zia-Ali N, Sharifi I, Mohammadi MA, Kagnoff MF, Eckmann L, Singer SM,
     Solaymani-Mohammadi S. Adaptive immune response in symptomatic and asymptomatic enteric
     protozoal infection: evidence for a determining role of parasite genetic heterogeneity in host
     immunity to human giardiasis. Microbes and Infection. 2016;18(11):687–695.

Bansal S, Chowell G, Simonsen L, Vespignani A, Vibound C. Big data for infectious disease
     surveillance and modeling . The Journal of Infectious Diseases. 2016;214(4):375–379.

Chen C, Jin J, Lee GA, Silva E, Donoghue M. Cross-species functional analyses reveal shared and
     separate roles for Sox11 in frog primary neurogenesis and mouse cortical neuronal
     differentiation. Biology Open. 2016;5(4):409–417.

Chowell G, Sattenspiel L, Bansal S, Viboud C. Mathematical models to characterize early epidemic
     growth: A review. Physics of Life Reviews. 2016;18:66–97.

Coelho CH, Costa AO, Silva ACC, Pucci MM, Serufo AV, Busatti HGNO, Durigan M, Perales J,
     Chapeaurouge A, Daniel Almeida Da Silva E Silva, et al. Genotyping and Descriptive
     Proteomics of a Potential Zoonotic Canine Strain of Giardia duodenalis, Infective to Mice. Plos
     One. 2016;11(10).

Denlinger DL, Armbruster PA. Physiology of mosquito diapause. In: Raikhel A, editor. Advances in
     Insect Physiology. Vol. 51. Oxford, Academic Press; 2016. p. 329–361.

Ewing A, Lee EC, Viboud C, Bansal S. Contact, travel, and transmission: The impact of winter
     holidays on influenza dynamics in the United States. Journal of Infectious Diseases.

Huang JK, Káradóttir RT. Oligodendrocytes in health and disease. Neuropharmacology.
     2016;110(Pt B):537–538.

Huang X, Chen X-G, Armbruster PA. Comparative performance of transcriptome assembly methods
     for non-model organisms. BMC Genomics. 2016;17(1).

Keselman A, Li E, Maloney J, Singer SM. The Microbiota Contributes to CD8 T Cell Activation
     and Nutrient Malabsorption following Intestinal Infection with Giardia duodenalis. Infection and
     Immunity. 2016;84(10):2853–2860.

Kyrillos A, Arora G, Murray B, Rosenwald AG. The Presence of Phage Orthologous Genes
     inHelicobacter pyloriCorrelates with the Presence of the Virulence FactorsCagAandVacA.
     Helicobacter. 2016;21(3):226–233.

Lee EC, Asher JM, Goldlust S, Kraemer JD, Lawson AB, Bansal S. Mind the Scales: Harnessing
     Spatial Big Data for Infectious Disease Surveillance and Inference. Journal of Infectious
     Diseases. 2016;214(4).

Li E, Tako EA, Singer SM. Complement Activation by Giardia duodenalis Parasites through the
     Lectin Pathway Contributes to Mast Cell Responses and Parasite Control. Infection and
     Immunity. 2016;84(4):1092–1099.

Mallory HS, Howard AF, Weiss MR. Timing of Environmental Enrichment Affects Memory in the
     House Cricket, Acheta domesticus. Plos One. 2016;11(4):e0152245.

Manlik O, Mcdonald JA, Mann J, Raudino HC, Bejder L, Krützen M, Connor RC, Heithaus MR,
     Lacy RC, Sherwin WB. The relative importance of reproduction and survival for the
     conservation of two dolphin populations. Ecology and Evolution. 2016;6(11):3496–3512.

Mooring EQ, Bansal S. Increasing herd immunity with influenza revaccination. Epidemiology and
     Infection. 2016;144(6):1267–1277.

Murphy SM, Battocletti AH, Tinghitella RM, Wimp GM, Ries L. Complex community and
     evolutionary responses to habitat fragmentation and habitat edges: what can we learn from insect
     science? Current Opinion in Insect Science. 2016;14:61–65.

O’Dea EB, Snelson H, Bansal S. Using heterogeneity in the population structure of U.S. swine
     farms to compare transmission models for porcine epidemic diarrhoea. Scientific Reports.

Patten MM. Epigenetics: Imprinting evolution in Arabidopsis. Nature Plants. 2016;2(10):16152.

Patten MM, Cowley M, Oakey RJ, Feil R. Regulatory links between imprinted genes: evolutionary
     predictions and consequences. Proceedings of the Royal Society B: Biological Sciences.

Psachoulia K, Chamberlain KA, Heo D, Davis SE, Paskus JD, Nanescu SE, Dupree JL, Wynn TA,
     Huang JK. IL4I1 augments CNS remyelination and axonal protection by modulating T cell
     driven inflammation. Brain. 2016;139(12):3121–3136.

Rankin RW, Mann J, Singh L, Patterson EM, Krzyszczyk E, Bejder L. The role of weighted and
     topological network information to understand animal social networks: a null model approach.
     Animal Behaviour. 2016;113(2016):215–228.

Rosenwald AG, Arora G, Ferrandino R, Gerace EL, Mohammednetej M, Nosair W, Rattila S, Subic
     AZ, Rolfes R. Identification of Genes in Candida glabrata Conferring Altered Responses to
     Caspofungin, a Cell Wall Synthesis Inhibitor. G3 (Bethesda). 2016;6(9):2893–2907.

Rosenwald AG, Arora G, Ferrandino R, Gerace EL, Mohammednetej M, Nosair W, Rattila S, Subic
     AZ, Rolfes R. Identification of Genes in Candida glabrata Conferring Altered Responses to
     Caspofungin, a Cell Wall Synthesis Inhibitor. G3. 2016;6(9):2893–2907.

Rosenwald AG, Pauley MA, Welch L, Elgin SCR, Wright R, Blum J. The CourseSource
     Bioinformatics Learning Framework. CBE—Life Sciences Education. 2016;15(1).

Rydzewski WT, Carioscia SA, Liévano G, Lynch VD, Patten MM. Sexual antagonism and meiotic
     drive cause stable linkage disequilibrium and favour reduced recombination on the X
     chromosome. Journal of Evolutionary Biology. 2016;29(6):1247–1256.

Sah P, Nussear KE, Esque TC, Aiello CM, Hudson PJ, Bansal S. Inferring social structure and its
     drivers from refuge use in the desert tortoise, a relatively solitary species. Behavioral Ecology
     and Sociobiology. 2016;70(8):1277–1289.

Saunders SP, Ries L, Oberhauser KS, Zipkin EF. Evaluating confidence in population-level
     predictions from climate impacts: Summer abundances of the monarch butterfly. Global Ecology
     and Biogeography. 2016;25(8):1000–1012.

Schmucki R, Peer G, Roy DB, Stefanescu C, Swaay CAV, Oliver TH, Kuussaari M, Strien AJV,
     Ries L, Settele J, et al. A regionally informed abundance index for supporting integrative
     analyses across butterfly monitoring schemes. Journal of Applied Ecology. 2015;53(2):501–510.

Solaymani-Mohammadi S, Lakhdari O, Minev I, Shenouda S, Frey BF, Billeskov R, Singer SM,
     Berzofsky JA, Eckmann L, Kagnoff MF. Lack of the programmed death-1 receptor renders host
     susceptible to enteric microbial infection through impairing the production of the mucosal
     natural killer cell effector molecules. Journal of Leukocyte Biology. 2016;99(3):475–482.

Steidle EA, Chong LS, Wu M, Crooke E, Fiedler D, Resnick AC, Rolfes RJ. A Novel Inositol
     Pyrophosphate Phosphatase inSaccharomyces cerevisiae. Journal of Biological Chemistry.

Thorson JT, Ianelli JN, Larsen EA, Ries L, Scheuerell MD, Szuwalski C, Zipkin EF. Joint dynamic
     species distribution models: a tool for community ordination and spatio-temporal monitoring.
     Global Ecology and Biogeography. 2016;25(9):1144–1158.

Tosh K, Mittereder L, Bonne-Annee S, Hieny S, Nutman TB, Singer SM, Sher A, Jankovic D. The
     IL-12 response of primary human DC and monocytes to Toxoplasma gondii is stimulated by
     phagocytosis of live parasites rather than host cell invasion. Journal of Immunology.

Walker T, Huang J, Young K. Neural Stem and Progenitor Cells in Nervous System Function and
     Therapy. Stem Cells International. 2016;2016:1–2.

Wallen MM, Patterson EM, Krzyszczyk E, Mann J. The ecological costs to females in a system with
     allied sexual coercion. Animal Behaviour. 2016;115(2016):227–236.

Waters NR, Samuels DJ, Behera RK, Livny J, Rhee KY, Sadykov MR, Brinsmade SR. A spectrum
     of CodY activities drives metabolic reorganization and virulence gene expression in
     Staphylococcus aureus. Molecular Microbiology. 2016;101(3):495–514.

Welch L, Brooksbank C, Schwartz R, Morgan SL, Gaeta B, Kilpatrick AM, Mietchen D, Moore BL,
     Mulder N, Pauley M, et al. Applying, Evaluating and Refining Bioinformatics Core
     Competencies (An Update from the Curriculum Task Force of ISCB’s Education Committee).
     PLOS Computational Biology. 2016;12(5).

Xie T, Vora A, Mulcahey PJ, Nanescu SE, Singh M, Choi DS, Huang JK, Liu C-C, Sanders DP,
     Hahm J-I. Surface Assembly Configurations and Packing Preferences of Fibrinogen Mediated by
     the Periodicity and Alignment Control of Block Copolymer Nanodomains. ACS Nano.

Yang S, Rosenwald AG. Autophagy in Saccharomyces cerevisiae requires the monomeric GTP-
     binding proteins, Arl1 and Ypt6. Autophagy. 2016;12(10):1721–1737.